hpoterm.rst

HPOTerm

HPOTerm instances contain all relevant information about a single HPO term. They are part of an Ontology and contain links to parental and offspring HPOTerm s.

HPOTerm

.. autoclass:: pyhpo.term.HPOTerm
   :no-private-members:
   :no-special-members:

Attributes

.. autoattribute:: pyhpo.term.HPOTerm.id

.. autoattribute:: pyhpo.term.HPOTerm.name

.. autoattribute:: pyhpo.term.HPOTerm.information_content

.. autoattribute:: pyhpo.term.HPOTerm.comment

.. autoattribute:: pyhpo.term.HPOTerm.definition

.. autoattribute:: pyhpo.term.HPOTerm.synonym

.. autoattribute:: pyhpo.term.HPOTerm.parents

.. autoattribute:: pyhpo.term.HPOTerm.children

.. autoattribute:: pyhpo.term.HPOTerm.genes

.. autoattribute:: pyhpo.term.HPOTerm.omim_diseases

.. autoattribute:: pyhpo.term.HPOTerm.orpha_diseases

.. autoattribute:: pyhpo.term.HPOTerm.decipher_diseases

parent_of

.. automethod:: pyhpo.term.HPOTerm.parent_of

child_of

.. automethod:: pyhpo.term.HPOTerm.child_of

parent_ids

.. automethod:: pyhpo.term.HPOTerm.parent_ids

common_ancestors

.. automethod:: pyhpo.term.HPOTerm.common_ancestors

count_parents

.. automethod:: pyhpo.term.HPOTerm.count_parents

longest_path_to_root

.. automethod:: pyhpo.term.HPOTerm.longest_path_to_root

shortest_path_to_root

.. automethod:: pyhpo.term.HPOTerm.shortest_path_to_root

shortest_path_to_parent

.. automethod:: pyhpo.term.HPOTerm.shortest_path_to_parent

longest_path_to_bottom

.. automethod:: pyhpo.term.HPOTerm.longest_path_to_bottom

path_to_other

.. automethod:: pyhpo.term.HPOTerm.path_to_other

similarity_score

.. automethod:: pyhpo.term.HPOTerm.similarity_score

toJSON

.. automethod:: pyhpo.term.HPOTerm.toJSON

InformationContent

.. autoclass:: pyhpo.term.InformationContent
   :no-private-members:
   :no-special-members:

Default attributes

.. autoattribute:: pyhpo.term.InformationContent.gene

.. autoattribute:: pyhpo.term.InformationContent.omim

.. autoattribute:: pyhpo.term.InformationContent.orpha

.. autoattribute:: pyhpo.term.InformationContent.decipher

set_custom

.. automethod:: pyhpo.term.InformationContent.set_custom