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Annotations

The Annotations section contains various metadata annotations for HPO terms.

GeneSingleton class

.. autoclass:: pyhpo.annotations.GeneSingleton
   :no-private-members:
   :no-special-members:

toJSON

.. automethod:: pyhpo.annotations.GeneSingleton.toJSON

GeneDict class

.. autoclass:: pyhpo.annotations.GeneDict
   :no-private-members:
   :no-special-members:

DiseaseSingleton class

.. autoclass:: pyhpo.annotations.DiseaseSingleton
   :no-private-members:
   :no-special-members:

toJSON

.. automethod:: pyhpo.annotations.DiseaseSingleton.toJSON

DiseaseDict class

.. autoclass:: pyhpo.annotations.DiseaseDict
   :no-private-members:
   :no-special-members:

Omim

Instance of :class:`pyhpo.annotations.DiseaseDict` to handle Omim diseases. Ensures that diseases are not duplicated through use of Singletons.

Orpha

Instance of :class:`pyhpo.annotations.DiseaseDict` to handle Orphanet diseases. Ensures that diseases are not duplicated through use of Singletons.

Decipher

Instance of :class:`pyhpo.annotations.DiseaseDict` to handle Decipher diseases. Ensures that diseases are not duplicated through use of Singletons.