Installation

PIP / PyPI

You can also install PyHPO from source by cloning the git repository:

git clone https://github.com/Centogene/pyhpo.git

I recommend to use a virtual environment to use PyHPO:

cd pyhpo
virtualenv venv
source ./venv/bin/activate

Install dependencies:

pip install -r requirements.txt

If you want to contribute to PyHPO development, first install from source (see above), then install all dev dependencies:

pip install -r requirements_dev.txt

Make sure to install mypy and linter, such as flake8 or ruff.