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Bugs fix & Improvements required #32

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Changwanseo opened this issue May 9, 2024 · 1 comment
Open

Bugs fix & Improvements required #32

Changwanseo opened this issue May 9, 2024 · 1 comment
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@Changwanseo
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Changwanseo commented May 9, 2024

  1. Bug fixes
    1.1 Weird Exception happens during outgroup selection (should find the case)
    1.2 When error occurs during input management, the information goes directly to result without modifications (should find the case)
    1.3 When no corresponding sequence exists in query, the result should be "no sequence" rather than "error"

  2. Code improvements
    2.1 Better version control of implied softwares
    2.2 Seperate is_valid_accession and is_valid_sequence function from manage_input.py
    2.3 Make it quiet during unidecode, makeblastdb, modeltest and mafft
    2.4 add overall input command to report

  3. Installation issues
    3.1 Change FunID to FunIP in pypi and conda
    3.2 Find installation fails in diverse environment

  4. Long term development
    4.1 Move multiprocessing to Ray
    4.2 Multiprocessing logging

Make tutorial

@Changwanseo Changwanseo self-assigned this May 9, 2024
@Changwanseo
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2.1, 2.3, 2.4 applied
3.1 applied for pypi (FunVIP)

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