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Commits on Jul 2, 2013

• Import the latest from bioconductor's SVN. (rTANDEM version 1.1.1)

  Frederic-bioinfo

  committedJul 2, 2013
  ea8aa29

Commits on Dec 20, 2012

• Changes suggested by Martin Morgan following 'codetoolsBioC'.

  Frederic-bioinfo

  committedDec 20, 2012
  800c426

Commits on Dec 14, 2012

• Version change

  Frederic-bioinfo

  committedDec 14, 2012
  df74fbb

• Added a setter for rTParam: setParamValue(). All examples were modified to use the new function. Documenation was updated to include the new function.

  Frederic-bioinfo

  committedDec 14, 2012
  4f85c2c

• Corrected the Rprintf commands for better display of xtandem output. (Variables were not correctly interpolated in messages.)

  Frederic-bioinfo

  committedDec 14, 2012
  e7e3f16

Commits on Dec 13, 2012

• Added #define CSTACK_DEFNS for R_CStackLimit

  Frederic-bioinfo

  committedDec 13, 2012
  7cbb288

• Disabled R C-stack checking

  Frederic-bioinfo

  committedDec 13, 2012
  aa5f281

• revision change

  Frederic-bioinfo

  committedDec 13, 2012
  b399b3f

Commits on Dec 12, 2012

• Corrected typo in License field

  Frederic-bioinfo

  committedDec 12, 2012
  d08c245

• Added examples to the accessors and convertors man pages.

  Frederic-bioinfo

  committedDec 12, 2012
  16ec525

• Added xtandem license information

  Frederic-bioinfo

  committedDec 12, 2012
  639c2ab

Commits on Dec 11, 2012

• Changes to the configuration procedure suggested by Simon Urbanek.

  Frederic-bioinfo

  committedDec 11, 2012
  51a8282

Commits on Nov 27, 2012

• Corrected syntax of dependency

  Frederic-bioinfo

  committedNov 27, 2012
  4314662

• Added version dependency on data.table. Changed procedure for linking against expat during windows build.

  Frederic-bioinfo

  committedNov 27, 2012
  7758d71

Commits on Nov 21, 2012

• Adjusted date, version and 'news' for first submission to bioconductor

  Frederic-bioinfo

  committedNov 21, 2012
  d665b60

• Correction of typos and small mistakes in the documentation.

  Frederic-bioinfo

  committedNov 21, 2012
  9c07967

• Deleted data and part of fasta file to meet bioconductor 2M limit.

  Frederic-bioinfo

  committedNov 21, 2012
  6e9a410

Commits on Nov 20, 2012

• Modifications to Makevar and README for compilation on Windows.

  Frederic-bioinfo

  committedNov 20, 2012
  f0e45d4

• Removed 'hello world' files.

  Frederic-bioinfo

  committedNov 20, 2012
  038269c

• Rene is added as an autor in all documentation

  Frederic-bioinfo

  committedNov 20, 2012
  90c7b9e

• File renamed to follow bioconductor guidelines

  Frederic-bioinfo

  committedNov 20, 2012
  2c1934e

Commits on Nov 19, 2012

• Makevars.win: Paths are no longer absolute

  CharlesJB

  committedNov 19, 2012
  2b3948d

• Corrected a small bug in GetDegeneracy causing the function not to work if there is indeed degeneracy.

  Frederic-bioinfo

  committedNov 19, 2012
  91a1ed4

• Added a biomaRt section in the walkthrough of the vignette.

  Frederic-bioinfo

  committedNov 19, 2012
  b053edd

Commits on Nov 16, 2012

• Deleted file toto. (Why was toto added in the first place??)

  Frederic-bioinfo

  committedNov 16, 2012
  85c2a3a

• Merge remote-tracking branch 'upstream/master'

  Frederic-bioinfo

  committedNov 16, 2012
  4dd651b

• Modified Charles' name.

  Frederic-bioinfo

  committedNov 16, 2012
  a03f87f

• Added dummy variable declarations to some functions to prevent the "no visible binding" note from R CMD check when using data.table 'subset' function.

  Frederic-bioinfo

  committedNov 16, 2012
  0dad36f

• Updated the vignette to provide a step by step demonstration of the package (including the new accessor functions).

  Frederic-bioinfo

  committedNov 16, 2012
  c3ffb46

Commits on Nov 15, 2012

• test

  DrArnaud

  committedNov 15, 2012
  2e2de1a

• Removed cout and cerr

  CharlesJB

  committedNov 15, 2012
  b0da1bc

Commits on Nov 6, 2012

• Fixed compilation warnings in X! tandem

  Sébastien Boisvert

  committedNov 6, 2012
  6633bb5

• Removed some signed/unsigned comparisons causing Warning when compiling on Windows

  CharlesJB

  committedNov 6, 2012
  85fedd4

• Added Rcpp.h include to class calling Rprintf

  CharlesJB

  committedNov 6, 2012
  fd8b87e

Commits on Nov 5, 2012

• Removed cout/cerr/exit Warnings

  CharlesJB

  committedNov 5, 2012
  48b35a6

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