All notable changes to this project will be documented in this file.
- Add genome database for intergenic region (hg19, hg38)
- Add functions for modeling intergenic region
- Add warning message if there is no variant past the feature selection
- Add warning message if there is no variant remained in previous step
- Update the UCSC mysql host
- Fix error when modeling empty feature set (step5)
- Fix error when modeling empty feature set (step6)
- Refine PRS plot
- Add standalone AppGenEpi.app
- Fix the bug of joblib multithreading
- Fix unsupported image format for ploting PRS
- Fix executable python for AppGenEpi
- Fix file path bug for ploting PRS
- Remove unused PIL import
- Add AppGenEpi (GUI)
- Add polygenic risk score calculation for classifier
- Add sliding windows scanning to deal with mega genes
- Add GenEpi's documentation to Read the Docs
- Add model persistance for classifier and regressor
- Add multiprocessing for gene batch running
- Support self-defiend genome regions (for any species)
- Add argument parser (GenEpi -h)
- Add "GenEpi" to bin when installing
- Add output log
- Add quick test
- Add change log in Changelog.md
- Change feature encoder for reducing memory usage
- Remove random forest ensemble