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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
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<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Python Module Index — ClearMap 0.9.2 documentation</title>
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<p style="font-size: 30px; color: color: #11557C"> <a href="index.html" style="color: #11557C; font-weight: bold">ClearMap iDISCO+ Toolbox Documentation</a></p>
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<h1>Python Module Index</h1>
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<table class="indextable modindextable" cellspacing="0" cellpadding="2">
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<tr class="cap" id="cap-c"><td></td><td>
<strong>c</strong></td><td></td></tr>
<tr>
<td><img src="_static/minus.png" class="toggler"
id="toggle-1" style="display: none" alt="-" /></td>
<td>
<a href="api/ClearMap.html#module-ClearMap"><code class="xref">ClearMap</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Alignment.html#module-ClearMap.Alignment"><code class="xref">ClearMap.Alignment</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Alignment.html#module-ClearMap.Alignment.Elastix"><code class="xref">ClearMap.Alignment.Elastix</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Alignment.html#module-ClearMap.Alignment.Resampling"><code class="xref">ClearMap.Alignment.Resampling</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Analysis.html#module-ClearMap.Analysis"><code class="xref">ClearMap.Analysis</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Analysis.html#module-ClearMap.Analysis.Label"><code class="xref">ClearMap.Analysis.Label</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Analysis.html#module-ClearMap.Analysis.Statistics"><code class="xref">ClearMap.Analysis.Statistics</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Analysis.Tools.html#module-ClearMap.Analysis.Tools"><code class="xref">ClearMap.Analysis.Tools</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Analysis.Tools.html#module-ClearMap.Analysis.Tools.Extrapolate"><code class="xref">ClearMap.Analysis.Tools.Extrapolate</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Analysis.Tools.html#module-ClearMap.Analysis.Tools.MultipleComparisonCorrection"><code class="xref">ClearMap.Analysis.Tools.MultipleComparisonCorrection</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Analysis.Tools.html#module-ClearMap.Analysis.Tools.StatisticalTests"><code class="xref">ClearMap.Analysis.Tools.StatisticalTests</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Analysis.html#module-ClearMap.Analysis.Voxelization"><code class="xref">ClearMap.Analysis.Voxelization</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing"><code class="xref">ClearMap.ImageProcessing</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.BackgroundRemoval"><code class="xref">ClearMap.ImageProcessing.BackgroundRemoval</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.CellDetection"><code class="xref">ClearMap.ImageProcessing.CellDetection</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.CellSizeDetection"><code class="xref">ClearMap.ImageProcessing.CellSizeDetection</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.Filter.html#module-ClearMap.ImageProcessing.Filter"><code class="xref">ClearMap.ImageProcessing.Filter</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.Filter.html#module-ClearMap.ImageProcessing.Filter.Convolution"><code class="xref">ClearMap.ImageProcessing.Filter.Convolution</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.Filter.html#module-ClearMap.ImageProcessing.Filter.DoGFilter"><code class="xref">ClearMap.ImageProcessing.Filter.DoGFilter</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.Filter.html#module-ClearMap.ImageProcessing.Filter.FilterKernel"><code class="xref">ClearMap.ImageProcessing.Filter.FilterKernel</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.Filter.html#module-ClearMap.ImageProcessing.Filter.LinearFilter"><code class="xref">ClearMap.ImageProcessing.Filter.LinearFilter</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.Filter.html#module-ClearMap.ImageProcessing.Filter.StructureElement"><code class="xref">ClearMap.ImageProcessing.Filter.StructureElement</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.GreyReconstruction"><code class="xref">ClearMap.ImageProcessing.GreyReconstruction</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.IlastikClassification"><code class="xref">ClearMap.ImageProcessing.IlastikClassification</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.IlluminationCorrection"><code class="xref">ClearMap.ImageProcessing.IlluminationCorrection</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.ImageStatistics"><code class="xref">ClearMap.ImageProcessing.ImageStatistics</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.MaximaDetection"><code class="xref">ClearMap.ImageProcessing.MaximaDetection</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.SpotDetection"><code class="xref">ClearMap.ImageProcessing.SpotDetection</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.ImageProcessing.html#module-ClearMap.ImageProcessing.StackProcessing"><code class="xref">ClearMap.ImageProcessing.StackProcessing</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO"><code class="xref">ClearMap.IO</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.CSV"><code class="xref">ClearMap.IO.CSV</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.FileList"><code class="xref">ClearMap.IO.FileList</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.Imaris"><code class="xref">ClearMap.IO.Imaris</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.IO"><code class="xref">ClearMap.IO.IO</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.NPY"><code class="xref">ClearMap.IO.NPY</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.NRRD"><code class="xref">ClearMap.IO.NRRD</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.RAW"><code class="xref">ClearMap.IO.RAW</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.TIF"><code class="xref">ClearMap.IO.TIF</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.IO.html#module-ClearMap.IO.VTK"><code class="xref">ClearMap.IO.VTK</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Parameter.html#module-ClearMap.Parameter"><code class="xref">ClearMap.Parameter</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Settings.html#module-ClearMap.Settings"><code class="xref">ClearMap.Settings</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Utils.html#module-ClearMap.Utils"><code class="xref">ClearMap.Utils</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Utils.html#module-ClearMap.Utils.ParameterTools"><code class="xref">ClearMap.Utils.ParameterTools</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Utils.html#module-ClearMap.Utils.ProcessWriter"><code class="xref">ClearMap.Utils.ProcessWriter</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Utils.html#module-ClearMap.Utils.Timer"><code class="xref">ClearMap.Utils.Timer</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Visualization.html#module-ClearMap.Visualization"><code class="xref">ClearMap.Visualization</code></a></td><td>
<em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>
<a href="api/ClearMap.Visualization.html#module-ClearMap.Visualization.Plot"><code class="xref">ClearMap.Visualization.Plot</code></a></td><td>
<em></em></td></tr>
</table>
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