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README

Installation:

BLAS and LAPACK

$ sudo apt-get install libblas-dev liblapack-dev libopenblas-base libopenblas-dev

OPEN MP

$ sudo apt-get install libomp-dev

MPI

Download

$ mkdir $OPENMPIBUILDDIR
$ cd $MPIDIR
$ ./configure --prefix=$OPENMPIBUILDDIR
$ make (all)
$ make install

execute programm with mpirun -np NumProcessors programm

suitesparse:

needs blas and lapack and openblas

option 1 : install
sudo apt-get install libsuitesparse-dev
option 2: Include in source/externalLib (recommended):

unzip to SuiteSparse cd SuiteSparse (if IPOPT is used: delete folder SuiteSparseDirectory/metis-5) make

note: in /usr/include/suitesparse, the cmake-file in cmake/findSuiteSparse helps to find the library

eigen

option 1 : install

sudo apt-get install libeigen3-dev

option 2: Include in source/externalLib (recommended)

boost#:

option 1: Install from archive manager:

UNIX: sudo apt-get install libboost-all-dev

option 2: build from source

download from boost.org/users/download extract to $BOOSTDIR, e.g. $BOOSTDIR = /home/user/prog/boost_1_75_0

UNIX: Open Terminal and navigate to $BOOSTDIR Run ./bootstrap.sh

To install, the options are listed by using ./b2 --help

Consruct build and install directory: mkdir boost-build mkdir boost-install

Run ./b2 --build-dir="$BOOSTDIR/boost-build" --prefix="$BOOSTDIR/boost-install" --build-type=minimal --layout=system toolset=gcc install

(layout=versioned produces another directory structure and libraries are name with version numbers. It seems that cmake cannot find the versioned libraries?) (build-type=complete installs all libraries, but minimal should be sufficient. Note that minimal is platform-dependent.)

Run ./b2 install --prefix=PREFIX where PREFIX is a directory where you want Boost.Build to be installed.

WINDOWS: open shell-script bootstrap

On the command line, go to the root of the unpacked tree. Run ./bootstrap.sh Run ./b2 install --prefix=PREFIX where PREFIX is a directory where you want Boost.Build to be installed.

VTK:

[Download] (http://www.vtk.org/Wiki/VTK/Configure_and_Build)

Requirement: OpenGL sudo apt-get install freeglut3-dev

unzip source code into directory VTK
cd VTK
mkdir build
cd build
ccmake ../
configure (c)
set CMAKE_Build_Type to Release
configure (c)
generate (g)
make
to run VTK on server:

install xvfb: sudo apt-get install xvfb run programm with nohup xvfb-run -a --server-args "-screen 0 1920x1080x24" ./programm &>/dev/null& 2>&1

info:
            Legacy (.vtk)                        New (XML)

structured STRUCTURED_POINTS .vti (vtkImageData) STRUCTURED_GRID .vts unstructured RECTLINEAR_GRID .vtr POLYDATA .vtp UNSTRUCTURED_GRID .vtu

IPOPT

requires fortran compiler, e.g. sudo apt-get install gfortran

  1. unzip the IPOPT-package

  2. Install the ThirdParty-packages : $ cd $IPOPTDIR/ThirdParty/Blas $ ./get.Blas $ cd ../Lapack $ ./get.Lapack $ cd ../ASL $ ./get.ASL $ cd ../Mumps $ ./get.Mumps $ cd ../Metis $ ./get.Metis

To compile the HSL code as part of IPOPT: unpack the archive then move and rename the resulting directory to $IPOPTDIR/ThirdParty/HSL/coinhsl

$ cd $IPOPTDIR $ mkdir build $ cd build $ ../configure $ make $ make test $ make install

qt

https://www.qt.io/download-qt-installer

or sudo apt-get install qt5-default

gcc

check version with

$ gcc --version

to intall version 10: sudo apt-get install gcc-10 sudo apt-get install g++-10

sudo update-alternatives --remove-all gcc

sudo update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-10 100 --slave /usr/bin/g++ g++ /usr/bin/g++-10

sudo update-alternatives --config gcc

Cmake

check version with

$ cmake --version

for C++17 at least version 3.8 is required Download

the installation requires openssl

sudo apt-get install libssl-dev

to guarantee that ccmake is istalled: sudo apt-get install libncurses5-dev libncursesw5-dev

$ cd $CMAKEDIR
$ bash ./configure   or  ./bootstrap
(to install cmake-gui: ./configure --qt-gui )
$ make
$ make install

CMAKE-Setup:

if external library is installed in source/externalLibs, it should automatically work

else use

  • EIGEN_INCLUDE_DIR:PATH=$EIGENDIR
  • SUITESPARSE_LIBRARY_DIR:PATH=$SuiteSparseDir/lib
  • SUITESPARSE_CONFIG_LIB:FILEPATH=$SuiteSparseDir/lib/libsuitesparseconfig.so
  • CHOLMOD_INCLUDE_DIR:PATH=$SuiteSparseDir/include
  • IPOPT_INCLUDE_DIR:PATH=$IPOPTDIR/build/include/coin
  • IPOPT_LIBRARY:FILEPATH=$IPOPTDIR/build/lib/libipopt.so
  • VTK_DIR:PATH=$VTKDIR/build
  • MPI_INCLUDE_DIR=$OPENMPIBUILDDIR/include

if boost is installed from source:

  • PESOPT_BOOST_DIR:PATH=$BOOSTDIR/boost-install

Build documentation with DOXYGEN

  1. install: sudo apt-get install doxygen
  2. generate: cd source doxygen doxygen.conf

use debugger gdb

$ gdb ./programm 
$ run arguments
$ bt

Contribution guidelines

  • Writing tests
  • Code review
  • Other guidelines

Who do I talk to?

  • Repo owner or admin
  • Other community or team contact

Usage

The main executable is projects/dkt/paramSurfaces/ShellDeformIsometrySemiNonLinAdaptive

Parameter files are in /parameters/dkt (Plate, Half-Cylinder, Saddle)