Skip to content

Navigation Menu

Clinical-Genomics-Lund

Explore
For
- Enterprise
- Teams
- Startups
- Education
By Solution
Resources
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
Repositories
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

Clinical Genomics Lund

10 followers
Sweden

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned

gens gens Public

JavaScript 11 5
nextflow_wgs nextflow_wgs Public

Perl 5 5
nextflow_microwgs nextflow_microwgs Public

Perl 2 1
nextflow_tumwgs nextflow_tumwgs Public

Perl 2 2
SomaticPanelPipeline SomaticPanelPipeline Public

Perl 2

Repositories

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All HTML JavaScript Nextflow Perl Python R Roff Shell

Sort

Select order

Last updated Name Stars

Showing 10 of 49 repositories

bonsai-prp Public
Pipeline output Processing Program for Bonsai

Python 0 GPL-3.0 0 1 0 Updated May 29, 2024
bonsai Public
Visualize and analyze resistance and outbreak of bacterial pathogen

HTML 4 1 20 0 Updated May 29, 2024
coyote_blueprinted Public

Python 0 0 0 0 Updated May 28, 2024
SomaticPanelPipeline Public

Perl 0 2 14 (1 issue needs help) 3 Updated May 27, 2024
PGxModule Public
PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.

Nextflow 0 GPL-3.0 0 5 (1 issue needs help) 0 Updated May 27, 2024
nextflow_wgs Public

Perl 5 5 62 (4 issues need help) 6 Updated May 24, 2024
gens Public

JavaScript 11 MPL-2.0 5 25 1 Updated May 23, 2024
coyote_cli Public
command line interface for coyote

Python 0 1 1 0 Updated May 10, 2024
Pipeline-validation-tools Public
Set of tools for assisting verifications and validations.

R 0 0 0 0 Updated Apr 26, 2024
sarscov2-pipe Public
A boring sars-cov-2 pipeline

Shell 0 0 1 0 Updated Apr 26, 2024

View all repositories

People

Top languages

Loading…

Most used topics

Loading…

Footer

© 2024 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact

You can’t perform that action at this time.