-
Notifications
You must be signed in to change notification settings - Fork 3
/
constants.py
86 lines (85 loc) · 1.31 KB
/
constants.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
SAMPLE_KEYS = [
"SampleType",
"Description",
"SampleProject",
"Index1",
"Index2",
"Library_nM",
"QCFlag",
"Zscore_13",
"Zscore_18",
"Zscore_21",
"Zscore_X",
"Ratio_13",
"Ratio_18",
"Ratio_21",
"Ratio_X",
"Ratio_Y",
"MappedReads",
"GC_Dropout",
"AT_Dropout",
"Chr1_Ratio",
"Chr2_Ratio",
"Chr3_Ratio",
"Chr4_Ratio",
"Chr5_Ratio",
"Chr6_Ratio",
"Chr7_Ratio",
"Chr8_Ratio",
"Chr9_Ratio",
"Chr10_Ratio",
"Chr11_Ratio",
"Chr12_Ratio",
"Chr14_Ratio",
"Chr15_Ratio",
"Chr16_Ratio",
"Chr17_Ratio",
"Chr19_Ratio",
"Chr20_Ratio",
"Chr22_Ratio",
"Chr1",
"Chr2",
"Chr3",
"Chr4",
"Chr5",
"Chr6",
"Chr7",
"Chr8",
"Chr9",
"Chr10",
"Chr11",
"Chr12",
"Chr13",
"Chr14",
"Chr15",
"Chr16",
"Chr17",
"Chr18",
"Chr19",
"Chr20",
"Chr21",
"Chr22",
"ChrX",
"ChrY",
"FF_Formatted",
"FFY",
"FFX",
"DuplicationRate",
"Bin2BinVariance",
"UnfilteredCNVcalls",
"CNVSegment",
]
BATCH_KEYS = [
"Flowcell",
"SequencingDate",
"Median_13",
"Median_18",
"Median_21",
"Median_X",
"Median_Y",
"Stdev_13",
"Stdev_18",
"Stdev_21",
"Stdev_X",
"Stdev_Y",
]