/
sample.py
98 lines (94 loc) · 2.86 KB
/
sample.py
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from typing import Optional
from pydantic import BaseModel, Field
class Sample(BaseModel):
sample_id: str = Field(..., alias="SampleID")
batch_id: str = Field(..., alias="SampleProject")
SampleType: Optional[str]
Description: Optional[str]
Flowcell: Optional[str]
Index1: Optional[str]
Index2: Optional[str]
Library_nM: Optional[float]
QCFlag: Optional[str] # Check this!
Zscore_13: Optional[float]
Zscore_18: Optional[float]
Zscore_21: Optional[float]
Zscore_X: Optional[float]
MappedReads: Optional[int]
GC_Dropout: Optional[float]
AT_Dropout: Optional[float]
Chr1_Ratio: Optional[float]
Chr2_Ratio: Optional[float]
Chr3_Ratio: Optional[float]
Chr4_Ratio: Optional[float]
Chr5_Ratio: Optional[float]
Chr6_Ratio: Optional[float]
Chr7_Ratio: Optional[float]
Chr8_Ratio: Optional[float]
Chr9_Ratio: Optional[float]
Chr10_Ratio: Optional[float]
Chr11_Ratio: Optional[float]
Chr12_Ratio: Optional[float]
Chr13_Ratio: Optional[float]
Chr18_Ratio: Optional[float]
Chr21_Ratio: Optional[float]
ChrX_Ratio: Optional[float]
ChrY_Ratio: Optional[float]
Chr14_Ratio: Optional[float]
Chr15_Ratio: Optional[float]
Chr16_Ratio: Optional[float]
Chr17_Ratio: Optional[float]
Chr19_Ratio: Optional[float]
Chr20_Ratio: Optional[float]
Chr22_Ratio: Optional[float]
Chr1: Optional[int]
Chr2: Optional[int]
Chr3: Optional[int]
Chr4: Optional[int]
Chr5: Optional[int]
Chr6: Optional[int]
Chr7: Optional[int]
Chr8: Optional[int]
Chr9: Optional[int]
Chr10: Optional[int]
Chr11: Optional[int]
Chr12: Optional[int]
Chr13: Optional[int]
Chr14: Optional[int]
Chr15: Optional[int]
Chr16: Optional[int]
Chr17: Optional[int]
Chr18: Optional[int]
Chr19: Optional[int]
Chr20: Optional[int]
Chr21: Optional[int]
Chr22: Optional[int]
ChrX: Optional[int]
ChrY: Optional[int]
FF_Formatted: Optional[float]
FFY: Optional[float]
FFX: Optional[float]
DuplicationRate: Optional[float]
Bin2BinVariance: Optional[float]
UnfilteredCNVcalls: Optional[int]
CNVSegment: Optional[str]
segmental_calls: Optional[str]
include: Optional[bool]
change_include_date: Optional[str] = ""
comment: Optional[str] = ""
status_13: Optional[str]
status_18: Optional[str]
status_21: Optional[str]
status_X0: Optional[str]
status_XXX: Optional[str]
status_XXY: Optional[str]
status_XYY: Optional[str]
status_change_13: Optional[str] = ""
status_change_18: Optional[str] = ""
status_change_21: Optional[str] = ""
status_change_X0: Optional[str] = ""
status_change_XXX: Optional[str] = ""
status_change_XXY: Optional[str] = ""
status_change_XYY: Optional[str] = ""
class Config:
allow_population_by_field_name = True