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environment.yaml
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environment.yaml
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name: tsne
channels:
- spyder-ide
- appfanu
- plotly
- bioconda
- anaconda
- defaults
- conda-forge
dependencies:
- _anaconda_depends=2020.07=py38_0
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- alabaster=0.7.12=pyhd3eb1b0_0
- anaconda=custom=py38_1
- anaconda-client=1.7.2=py38_0
- anaconda-project=0.9.1=pyhd3eb1b0_1
- anyio=2.2.0=py38h06a4308_1
- appdirs=1.4.4=py_0
- argh=0.26.2=py38_0
- argon2-cffi=20.1.0=py38h27cfd23_1
- asn1crypto=1.4.0=py_0
- astroid=2.5=py38h06a4308_1
- astropy=4.2.1=py38h27cfd23_1
- async_generator=1.10=pyhd3eb1b0_0
- atomicwrites=1.4.0=py_0
- attrs=21.2.0=pyhd3eb1b0_0
- autopep8=1.5.4=py_0
- babel=2.9.1=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- backports=1.0=pyhd3eb1b0_2
- backports.shutil_get_terminal_size=1.0.0=pyhd3eb1b0_3
- beautifulsoup4=4.9.3=pyha847dfd_0
- bitarray=2.1.0=py38h27cfd23_1
- bkcharts=0.2=py38_0
- black=19.10b0=py_0
- blas=2.11=openblas
- bleach=3.3.0=pyhd3eb1b0_0
- blosc=1.21.0=h8c45485_0
- bokeh=2.3.2=py38h06a4308_0
- boto=2.49.0=py38_0
- bottleneck=1.3.2=py38heb32a55_1
- brotlipy=0.7.0=py38h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.17.1=h27cfd23_0
- ca-certificates=2022.5.18.1=ha878542_0
- cairo=1.16.0=hcf35c78_1003
- certifi=2022.5.18.1=py38h578d9bd_0
- cffi=1.14.0=py38h2e261b9_0
- chardet=4.0.0=py38h06a4308_1003
- click=8.0.0=pyhd3eb1b0_0
- cloudpickle=1.6.0=py_0
- clyent=1.2.2=py38_1
- colorama=0.4.4=pyhd3eb1b0_0
- contextlib2=0.6.0.post1=py_0
- cryptography=3.4.7=py38hd23ed53_0
- curl=7.71.1=hbc83047_1
- cycler=0.10.0=py38_0
- cython=0.29.21=py38he6710b0_0
- cytoolz=0.11.0=py38h7b6447c_0
- dask=2021.4.0=pyhd3eb1b0_0
- dask-core=2021.4.0=pyhd3eb1b0_0
- dbus=1.13.18=hb2f20db_0
- decorator=5.0.7=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd3eb1b0_0
- deprecated=1.2.12=pyhd3eb1b0_0
- diff-match-patch=20200713=py_0
- dill=0.3.5.1=pyhd8ed1ab_0
- distributed=2021.4.1=py38h06a4308_0
- docutils=0.17.1=py38h06a4308_1
- elementpath=2.0.4=pyhd8ed1ab_0
- entrypoints=0.3=py38_0
- et_xmlfile=1.0.1=py_1001
- expat=2.2.10=he6710b0_2
- fastcache=1.1.0=py38h7b6447c_0
- ffmpeg=4.3.1=h167e202_0
- filelock=3.0.12=pyhd3eb1b0_1
- flake8=3.8.4=py_0
- flask=1.1.2=pyhd3eb1b0_0
- fontconfig=2.13.1=h86ecdb6_1001
- freetype=2.10.4=h5ab3b9f_0
- fribidi=1.0.10=h7b6447c_0
- fsspec=0.9.0=pyhd3eb1b0_0
- future=0.18.2=py38_1
- geos=3.8.1=he1b5a44_0
- get_terminal_size=1.0.0=haa9412d_0
- gettext=0.19.8.1=hd7bead4_3
- gevent=21.1.2=py38h27cfd23_1
- glib=2.65.0=h6f030ca_0
- glob2=0.7=pyhd3eb1b0_0
- gmp=6.2.1=h2531618_2
- gmpy2=2.0.8=py38hd5f6e3b_3
- gnutls=3.6.15=he1e5248_0
- graphite2=1.3.14=h23475e2_0
- graphtools=1.5.2=py_0
- greenlet=1.1.0=py38h2531618_0
- gst-plugins-base=1.14.5=h0935bb2_2
- gstreamer=1.14.5=h36ae1b5_2
- h5py=2.10.0=py38hd6299e0_1
- harfbuzz=2.4.0=h9f30f68_3
- hdf5=1.10.6=hb1b8bf9_0
- heapdict=1.0.1=py_0
- html5lib=1.1=py_0
- icu=64.2=he1b5a44_1
- idna=2.10=pyhd3eb1b0_0
- imageio=2.9.0=pyhd3eb1b0_0
- imagesize=1.2.0=pyhd3eb1b0_0
- importlib-metadata=3.10.0=py38h06a4308_0
- importlib_metadata=3.10.0=hd3eb1b0_0
- iniconfig=1.1.1=pyhd3eb1b0_0
- intel-openmp=2021.2.0=h06a4308_610
- intervaltree=3.1.0=py_0
- ipykernel=5.3.4=py38h5ca1d4c_0
- ipython=7.22.0=py38hb070fc8_0
- ipython_genutils=0.2.0=pyhd3eb1b0_1
- ipywidgets=7.6.3=pyhd3eb1b0_1
- isort=5.8.0=pyhd3eb1b0_0
- itsdangerous=2.0.0=pyhd3eb1b0_0
- jasper=1.900.1=hd497a04_4
- jbig=2.1=hdba287a_0
- jdcal=1.4.1=py_0
- jedi=0.17.2=py38h06a4308_1
- jeepney=0.6.0=pyhd3eb1b0_0
- jinja2=2.11.3=pyhd3eb1b0_0
- joblib=1.0.1=pyhd3eb1b0_0
- jpeg=9d=h36c2ea0_0
- json5=0.9.5=py_0
- jsonschema=3.2.0=py_2
- jupyter=1.0.0=py38_7
- jupyter-packaging=0.7.12=pyhd3eb1b0_0
- jupyter_client=6.1.12=pyhd3eb1b0_0
- jupyter_console=6.4.0=pyhd3eb1b0_0
- jupyter_core=4.7.1=py38h06a4308_0
- jupyter_server=1.4.1=py38h06a4308_0
- jupyterlab=3.0.14=pyhd3eb1b0_1
- jupyterlab_pygments=0.1.2=py_0
- jupyterlab_server=2.4.0=pyhd3eb1b0_0
- jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
- keyring=22.3.0=py38h06a4308_0
- kiwisolver=1.3.1=py38h2531618_0
- krb5=1.18.2=h173b8e3_0
- lame=3.100=h7b6447c_0
- lazy-object-proxy=1.6.0=py38h27cfd23_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libarchive=3.4.2=h62408e4_0
- libblas=3.8.0=11_openblas
- libcblas=3.8.0=11_openblas
- libclang=9.0.1=default_hde54327_0
- libcurl=7.71.1=h20c2e04_1
- libedit=3.1.20210216=h27cfd23_1
- libev=4.33=h7b6447c_0
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=11.1.0=hc902ee8_8
- libgfortran-ng=7.5.0=h14aa051_20
- libgfortran4=7.5.0=h14aa051_20
- libgomp=11.1.0=hc902ee8_8
- libiconv=1.15=h63c8f33_5
- libidn2=2.3.0=h27cfd23_0
- liblapack=3.8.0=11_openblas
- liblapacke=3.8.0=11_openblas
- liblief=0.10.1=he6710b0_0
- libllvm10=10.0.1=hbcb73fb_5
- libllvm9=9.0.1=h4a3c616_1
- libopenblas=0.3.6=h5a2b251_2
- libopencv=4.4.0=py38_3
- libpng=1.6.37=hbc83047_0
- libraw=0.20.2=h10796ff_1
- libsodium=1.0.18=h7b6447c_0
- libspatialindex=1.9.3=h2531618_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=11.1.0=h56837e0_8
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.2.0=h85742a9_0
- libtool=2.4.6=h7b6447c_1005
- libunistring=0.9.10=h27cfd23_0
- libuuid=2.32.1=h14c3975_1000
- libuv=1.40.0=h7b6447c_0
- libwebp-base=1.2.0=h27cfd23_0
- libxcb=1.14=h7b6447c_0
- libxkbcommon=0.10.0=he1b5a44_0
- libxml2=2.9.9=hea5a465_1
- libxslt=1.1.33=h31b3aaa_0
- line_profiler=2.1.2=py38h7b6447c_0
- llvmlite=0.34.0=py38h269e1b5_4
- locket=0.2.1=py38h06a4308_1
- lxml=4.5.1=py38hefd8a0e_0
- lz4-c=1.9.3=h2531618_0
- lzo=2.10=h7b6447c_2
- markupsafe=1.1.1=py38h7b6447c_0
- matplotlib=3.3.4=py38h06a4308_0
- matplotlib-base=3.3.4=py38h62a2d02_0
- mccabe=0.6.1=py38_1
- mistune=0.8.4=py38h7b6447c_1000
- mkl=2020.2=256
- mkl-service=2.3.0=py38he904b0f_0
- mkl_fft=1.2.0=py38hab2c0dc_1
- mkl_random=1.2.0=py38hc5bc63f_1
- mock=4.0.3=pyhd3eb1b0_0
- more-itertools=8.7.0=pyhd3eb1b0_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.2.1=py38h06a4308_0
- msgpack-python=1.0.2=py38hff7bd54_1
- multipledispatch=0.6.0=py38_0
- multiprocess=0.70.12.2=py38h0a891b7_2
- mypy_extensions=0.4.3=py38_0
- nbclassic=0.2.6=pyhd3eb1b0_0
- nbclient=0.5.3=pyhd3eb1b0_0
- nbconvert=6.0.7=py38_0
- nbformat=5.1.3=pyhd3eb1b0_0
- ncurses=6.2=he6710b0_1
- nest-asyncio=1.5.1=pyhd3eb1b0_0
- nettle=3.7.2=hbbd107a_1
- networkx=2.5=py_0
- nltk=3.6.1=pyhd3eb1b0_0
- nose=1.3.7=pyhd3eb1b0_1006
- notebook=6.3.0=py38h06a4308_0
- nspr=4.22=he6710b0_0
- nss=3.46.1=hab99668_0
- numba=0.51.2=py38h0573a6f_1
- numexpr=2.7.3=py38h4be448d_1
- numpy=1.20.1=py38h5a90a98_0
- numpy-base=1.20.1=py38h34387ca_0
- numpydoc=1.1.0=pyhd3eb1b0_1
- olefile=0.46=py_0
- opencv=4.4.0=py38_3
- openh264=2.1.1=h8b12597_0
- openpyxl=3.0.7=pyhd3eb1b0_0
- openssl=1.1.1o=h166bdaf_0
- packaging=20.9=pyhd3eb1b0_0
- pandas=1.2.4=py38h2531618_0
- pandoc=2.12=h06a4308_0
- pandocfilters=1.4.3=py38h06a4308_1
- pango=1.45.3=hd140c19_0
- parso=0.7.0=py_0
- partd=1.2.0=pyhd3eb1b0_0
- patchelf=0.12=h2531618_1
- path=15.1.2=py38h06a4308_0
- path.py=12.5.0=0
- pathlib2=2.3.5=py38h06a4308_2
- pathos=0.2.8=pyhd8ed1ab_0
- pathspec=0.7.0=py_0
- pathtools=0.1.2=py_1
- patsy=0.5.1=py38_0
- pcre=8.44=he6710b0_0
- pep8=1.7.1=py38_0
- pexpect=4.8.0=pyhd3eb1b0_3
- phate=1.0.4=py_0
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pillow=8.2.0=py38he98fc37_0
- pip=21.0.1=py38h06a4308_0
- pixman=0.38.0=h7b6447c_0
- pkginfo=1.7.0=py38h06a4308_0
- plotly=5.8.0=py_0
- pluggy=0.13.1=py38h06a4308_0
- ply=3.11=py38_0
- pox=0.3.1=pyhd8ed1ab_0
- ppft=1.7.6.5=pyhd8ed1ab_0
- prometheus_client=0.10.1=pyhd3eb1b0_0
- prompt-toolkit=3.0.17=pyh06a4308_0
- prompt_toolkit=3.0.17=hd3eb1b0_0
- psutil=5.8.0=py38h27cfd23_1
- ptyprocess=0.7.0=pyhd3eb1b0_2
- py=1.10.0=pyhd3eb1b0_0
- py-lief=0.10.1=py38h403a769_0
- py-opencv=4.4.0=py38h1cdfbd6_3
- pycodestyle=2.6.0=pyhd3eb1b0_0
- pycosat=0.6.3=py38h7b6447c_1
- pycparser=2.20=py_2
- pycurl=7.43.0.6=py38h1ba5d50_0
- pydocstyle=6.0.0=pyhd3eb1b0_0
- pyerfa=1.7.3=py38h27cfd23_0
- pyflakes=2.2.0=pyhd3eb1b0_0
- pygments=2.8.1=pyhd3eb1b0_0
- pygsp=0.5.1=py_0
- pylint=2.7.4=py38h06a4308_1
- pyls-black=0.4.6=hd3eb1b0_0
- pyls-spyder=0.3.2=pyhd3eb1b0_0
- pynndescent=0.5.7=pyh6c4a22f_0
- pyodbc=4.0.30=py38he6710b0_0
- pyopenssl=20.0.1=pyhd3eb1b0_1
- pyparsing=2.4.7=pyhd3eb1b0_0
- pyqt=5.12.3=py38ha8c2ead_3
- pyrsistent=0.17.3=py38h7b6447c_0
- pysocks=1.7.1=py38h06a4308_0
- pytables=3.6.1=py38hf9f05d5_3
- pytest=6.2.3=py38h06a4308_2
- python=3.8.2=hcf32534_0
- python-annoy=1.17.0=py38h950e882_1
- python-dateutil=2.8.1=pyhd3eb1b0_0
- python-jsonrpc-server=0.4.0=py_0
- python-language-server=0.36.2=pyhd3eb1b0_0
- python-libarchive-c=2.9=pyhd3eb1b0_1
- python_abi=3.8=1_cp38
- pytz=2021.1=pyhd3eb1b0_0
- pywavelets=1.1.1=py38h7b6447c_2
- pyxdg=0.27=pyhd3eb1b0_0
- pyyaml=5.4.1=py38h27cfd23_1
- pyzmq=20.0.0=py38h2531618_1
- qdarkstyle=2.8.1=py_0
- qt=5.12.5=hd8c4c69_1
- qtawesome=1.0.2=pyhd3eb1b0_0
- qtconsole=5.0.3=pyhd3eb1b0_0
- qtpy=1.9.0=py_0
- rawpy=0.16.0=py38hb93dfd8_0
- readline=8.1=h27cfd23_0
- regex=2021.4.4=py38h27cfd23_0
- requests=2.25.1=pyhd3eb1b0_0
- ripgrep=12.1.1=0
- rope=0.18.0=py_0
- rtree=0.9.7=py38h06a4308_1
- ruamel_yaml=0.15.100=py38h27cfd23_0
- s_gd2=1.7=py38hbf85e49_2
- scikit-image=0.16.2=py38h0573a6f_0
- scikit-learn=0.24.1=py38ha9443f7_0
- scipy=1.6.2=py38hf56f3a7_1
- scprep=1.0.10=py_0
- seaborn=0.11.0=py_0
- secretstorage=3.3.1=py38h06a4308_0
- send2trash=1.5.0=pyhd3eb1b0_1
- setuptools=52.0.0=py38h06a4308_0
- shapely=1.7.1=py38h2765ab7_1
- simplegeneric=0.8.1=py38_2
- singledispatch=3.6.1=pyhd3eb1b0_1001
- sip=4.19.25=py38h2531618_0
- six=1.15.0=py38h06a4308_0
- snappy=1.1.8=he6710b0_0
- sniffio=1.2.0=py38h06a4308_1
- snowballstemmer=2.1.0=pyhd3eb1b0_0
- sortedcollections=2.1.0=pyhd3eb1b0_0
- sortedcontainers=2.3.0=pyhd3eb1b0_0
- soupsieve=2.2.1=pyhd3eb1b0_0
- sphinx=4.0.1=pyhd3eb1b0_0
- sphinxcontrib=1.0=py38_1
- sphinxcontrib-applehelp=1.0.2=pyhd3eb1b0_0
- sphinxcontrib-devhelp=1.0.2=pyhd3eb1b0_0
- sphinxcontrib-htmlhelp=1.0.3=pyhd3eb1b0_0
- sphinxcontrib-jsmath=1.0.1=pyhd3eb1b0_0
- sphinxcontrib-qthelp=1.0.3=pyhd3eb1b0_0
- sphinxcontrib-serializinghtml=1.1.4=pyhd3eb1b0_0
- sphinxcontrib-websupport=1.2.4=py_0
- spyder=4.2.5=py38h06a4308_0
- spyder-kernels=1.10.2=py38h06a4308_0
- spyder-notebook=0.3.1=pyhd8ed1ab_0
- sqlalchemy=1.4.15=py38h27cfd23_0
- sqlite=3.35.4=hdfb4753_0
- statsmodels=0.12.2=py38h27cfd23_0
- sympy=1.8=py38h06a4308_0
- tasklogger=1.0.0=py_0
- tbb=2021.2.0=hff7bd54_0
- tblib=1.7.0=py_0
- tenacity=8.0.1=py38h06a4308_0
- terminado=0.9.4=py38h06a4308_0
- testpath=0.4.4=pyhd3eb1b0_0
- textdistance=4.2.1=pyhd3eb1b0_0
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- three-merge=0.1.1=pyhd3eb1b0_0
- tk=8.6.10=hbc83047_0
- toml=0.10.2=pyhd3eb1b0_0
- toolz=0.11.1=pyhd3eb1b0_0
- tornado=6.1=py38h27cfd23_0
- tqdm=4.59.0=pyhd3eb1b0_1
- traitlets=5.0.5=pyhd3eb1b0_0
- typed-ast=1.4.2=py38h27cfd23_1
- typing_extensions=3.7.4.3=pyha847dfd_0
- ujson=4.0.2=py38h2531618_0
- umap-learn=0.5.3=py38h578d9bd_0
- unicodecsv=0.14.1=py38_0
- unixodbc=2.3.9=h7b6447c_0
- urllib3=1.26.4=pyhd3eb1b0_0
- watchdog=1.0.2=py38h06a4308_1
- wcwidth=0.2.5=py_0
- webencodings=0.5.1=py38_1
- werkzeug=1.0.1=pyhd3eb1b0_0
- wheel=0.36.2=pyhd3eb1b0_0
- widgetsnbextension=3.5.1=py38_0
- wrapt=1.12.1=py38h7b6447c_1
- wurlitzer=2.1.0=py38h06a4308_0
- x264=1!152.20180806=h7b6447c_0
- xlrd=2.0.1=pyhd3eb1b0_0
- xlsxwriter=1.3.8=pyhd3eb1b0_0
- xlwt=1.3.0=py38_0
- xmlschema=1.3.1=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.10=h516909a_0
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.12=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h27cfd23_1007
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h7b6447c_0
- yapf=0.31.0=pyhd3eb1b0_0
- zeromq=4.3.4=h2531618_0
- zict=2.0.0=pyhd3eb1b0_0
- zipp=3.4.1=pyhd3eb1b0_0
- zlib=1.2.11=h7b6447c_3
- zope=1.0=py38_1
- zope.event=4.5.0=py38_0
- zope.interface=5.3.0=py38h27cfd23_0
- zstd=1.4.5=h9ceee32_0
- pip:
- bash-kernel==0.7.2
- flowcal==1.2.2
- multicoretsne==0.1
- opencv-python==4.4.0.44
- palettable==3.3.0
- pyqt5-sip==4.19.18
- pyqtchart==5.12
- pyqtwebengine==5.12.1
- pythreshold==0.3.1
prefix: /home2/s189220/.conda/envs/tsne