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DESCRIPTION
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DESCRIPTION
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Package: mxnorm
Title: Apply Normalization Methods to Multiplexed Images
Version: 1.0.3
Authors@R:
person(given = "Coleman",
family = "Harris",
role = c("aut", "cre"),
email = "coleman.r.harris@vanderbilt.edu",
comment = c(ORCID = "0000-0002-6325-0694"))
Description: Implements methods to normalize multiplexed imaging data, including
statistical metrics and visualizations to quantify technical variation in
this data type. Reference for methods listed here: Harris, C., Wrobel, J.,
& Vandekar, S. (2022). mxnorm: An R Package to Normalize Multiplexed Imaging
Data. Journal of Open Source Software, 7(71), 4180,
<doi:10.21105/joss.04180>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2
Depends:
R (>= 3.5.0)
Suggests:
knitr,
janitor (>= 2.1.0),
testthat (>= 3.0.0),
rmarkdown,
markdown,
covr
Config/testthat/edition: 3
Config/reticulate:
list(
packages = list(
list(package = "scikit-image")
)
)
Imports:
magrittr,
dplyr,
rlang,
fda,
stats,
data.table,
reticulate,
caret,
e1071,
ggplot2,
tidyr,
uwot,
lme4,
stringr,
KernSmooth,
kSamples,
psych,
fossil,
glue,
methods
VignetteBuilder: knitr