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Error running mx_flex_q50 #12

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smith6jt-cop opened this issue Oct 6, 2023 · 1 comment
Open

Error running mx_flex_q50 #12

smith6jt-cop opened this issue Oct 6, 2023 · 1 comment
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@smith6jt-cop
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smith6jt-cop commented Oct 6, 2023

Hello,

I have been able to run my data (5 slides, 1 image each) through the basic workflow. When I tried to run the mx_flex_q50 as shown in the CRAN vignette I received the following error:

Error in if (any(data_values == Inf | data_values == -Inf)) { :
missing value where TRUE/FALSE needed
In addition: Warning message:
There was 1 warning in dplyr::mutate().
ℹ In argument: dplyr::across(all_of(cols), quantile, ptile).
ℹ In group 1: slide_id = "20-06-cc2C".
Caused by warning:
! The ... argument of across() is deprecated as of dplyr 1.1.0.
Supply arguments directly to .fns through an anonymous function instead.

Previously
across(a:b, mean, na.rm = TRUE)

Now
across(a:b, (x) mean(x, na.rm = TRUE))
This warning is displayed once every 8 hours.
Call lifecycle::last_lifecycle_warnings() to see where this warning was generated.

There is no error when running the sample dataset. Could this be caused by zeros in my dataset?

@ColemanRHarris
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Hi @smith6jt-cop, thank you for your comment. Can you share a full snippet of the code you are running?

@ColemanRHarris ColemanRHarris self-assigned this Oct 9, 2023
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