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ddomingof committed Oct 4, 2019
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Expand Up @@ -3,14 +3,22 @@ PathMe |build| |coverage| |docs| |zenodo|
PathMe is a Python package aimed to convert KEGG [2]_ [3]_ [4]_, Reactome [5]_ [6]_, and WikiPathways [7]_ [8]_ [9]_ to
Biological Expression Language (BEL).

It is the continuation of the ComPath web application aimed at exploring, analyzing,
This project is the continuation of the ComPath web application aimed at exploring, analyzing,
and curating pathway knowledge in a gene-centric view. This different approach involves converting
all the pathways in these resources into BEL as a pivotal integration schema to harmonize entities and relationships in
order across these multiple resources; thus, enabling a more comprehensive evaluation of pathway cross-talks, consensus,
and boundaries. Additionally, PathMe is complemented with the
`PathMe-Viewer <https://github.com/ComPath/PathMe-Viewer>`_, a web application that enables querying, browsing, and
navigating pathway knowledge assisted by a user-friendly visualization.

Database Versions
-----------------
PathMe currently uses the following versions of the databases:

- **KEGG**: Up-to-date (KEGG does not have tag its releases)
- **Reactome**: 67 Release
- **WikiPathways**: September 2019 Release

Citation
--------
If you use PathMe in your work, please consider citing:
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