Ensemble id checking bug

PathwayMerger · Oct 4, 2018 · 8eeb548 · 8eeb548
1 parent 65c4c7c
commit 8eeb548
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/pathme/wikipathways/utils.py b/src/pathme/wikipathways/utils.py
@@ -106,8 +106,8 @@ def get_valid_gene_identifier(node_ids_dict, hgnc_manager):
         return _validate_query(hgnc_manager, hgnc_entry, uniprot_id, UNIPROT)
 
     # Try to get ENSEMBL id
-    elif 'bdb_ncbigene' in node_ids_dict:
-        ensembl_id = node_ids_dict['bdb_ncbigene']
+    elif 'bdb_ensembl' in node_ids_dict:
+        ensembl_id = node_ids_dict['bdb_ensembl']
         hgnc_entry = hgnc_manager.get_gene_by_uniprot_id(ensembl_id)
 
         return _validate_query(hgnc_manager, hgnc_entry, ensembl_id, ENSEMBL)