Fix typo

PathwayMerger · Apr 25, 2019 · 94e57a0 · 94e57a0
1 parent fd2520a
commit 94e57a0
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/src/pathme/cli.py b/src/pathme/cli.py
@@ -386,20 +386,20 @@ def universe(kegg_path, reactome_path, wikipathways_path, output, no_flatten, no
         flatten=flatten,
         normalize_names=normalize_names,
     )
-    click.echo(f'Number of isolates after getting universe: {nx.number_of_isolates()}')
+    click.echo(f'Number of isolates after getting universe: {nx.number_of_isolates(universe_graph)}')
 
     if flatten:
         universe_graph.remove_nodes_from({
             node
             for node in universe_graph.nodes()
             if isinstance(node, ComplexAbundance)
         })
-        click.echo(f'Number of isolates after flattening: {nx.number_of_isolates()}')
+        click.echo(f'Number of isolates after flattening: {nx.number_of_isolates(universe_graph)}')
 
     click.echo("Merging variants and genes")
     collapse_all_variants(universe_graph)
     collapse_to_genes(universe_graph)
-    click.echo(f'Number of isolates after collapsing variants and to genes: {nx.number_of_isolates()}')
+    click.echo(f'Number of isolates after collapsing variants and to genes: {nx.number_of_isolates(universe_graph)}')
 
     universe_graph.name = 'PathMe Universe'