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Fix typo
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ddomingof committed Apr 25, 2019
1 parent 8ca733f commit f480346
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions src/pathme/cli.py
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
from bio2bel_chebi import Manager as ChebiManager
from bio2bel_hgnc import Manager as HgncManager
from pybel import from_pickle, to_pickle
from pybel.dsl import ComplexAbundance
from pybel.dsl import ListAbundance
from pybel.struct.mutation import collapse_to_genes, collapse_all_variants
from pybel_tools.analysis.spia import bel_to_spia_matrices, spia_matrices_to_excel
from pybel.struct.summary import count_functions
Expand Down Expand Up @@ -393,7 +393,7 @@ def universe(kegg_path, reactome_path, wikipathways_path, output, no_flatten, no
universe_graph.remove_nodes_from({
node
for node in universe_graph.nodes()
if isinstance(node, ComplexAbundance)
if isinstance(node, ListAbundance)
})
click.echo(f'Number of isolates after flattening: {nx.number_of_isolates(universe_graph)}')

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