trouble installing

[WernerHerzog]

Hi,
I am having trouble installing PharmaPy. It seems the main issue is related to Cython. Here is the log in case it helps.

(base) PS C:\WINDOWS\system32> cd 'C:\Users\MyName\Desktop\PharmaPy-master\PharmaPy-master'
At line:1 char:3

• Do .\InstallOnWindows.bat
• ~
  Missing statement body in do loop.
  • CategoryInfo : ParserError: (:) [], ParentContainsErrorRecordException
  • FullyQualifiedErrorId : MissingLoopStatement

(base) PS C:\Users\MyName\Desktop\PharmaPy-master\PharmaPy-master> .\InstallOnWindows.bat

Welcome to the PharmaPy installation wizard.

Enter environment name: PharmaPytry

Creating pandas environment...

Collecting package metadata (current_repodata.json): \ DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): conda.anaconda.org:443
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): repo.anaconda.com:443
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): conda.anaconda.org:443
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): repo.anaconda.com:443
| DEBUG:urllib3.connectionpool:https://repo.anaconda.com:443 "GET /pkgs/r/noarch/current_repodata.json HTTP/1.1" 304 0
DEBUG:urllib3.connectionpool:https://repo.anaconda.com:443 "GET /pkgs/main/noarch/current_repodata.json HTTP/1.1" 304 0
DEBUG:urllib3.connectionpool:https://repo.anaconda.com:443 "GET /pkgs/msys2/win-64/current_repodata.json HTTP/1.1" 304 0
/ DEBUG:urllib3.connectionpool:https://repo.anaconda.com:443 "GET /pkgs/main/win-64/current_repodata.json HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:https://repo.anaconda.com:443 "GET /pkgs/r/win-64/current_repodata.json HTTP/1.1" 304 0
DEBUG:urllib3.connectionpool:https://conda.anaconda.org:443 "GET /conda-forge/win-64/current_repodata.json HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:https://repo.anaconda.com:443 "GET /pkgs/msys2/noarch/current_repodata.json HTTP/1.1" 304 0
DEBUG:urllib3.connectionpool:https://conda.anaconda.org:443 "GET /conda-forge/noarch/current_repodata.json HTTP/1.1" 200 None
failed

CondaHTTPError: HTTP 000 CONNECTION FAILED for url https://conda.anaconda.org/conda-forge/win-64/current_repodata.json
Elapsed: -

An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your way.
'https//conda.anaconda.org/conda-forge/win-64'

EnvironmentNameNotFound: Could not find conda environment: PharmaPytry
You can list all discoverable environments with conda info --envs.

---

Installing PharmaPy...

running develop
C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\develop.py:40: EasyInstallDeprecationWarning: easy_install command is deprecated.
!!

    ********************************************************************************
    Please avoid running ``setup.py`` and ``easy_install``.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://github.com/pypa/setuptools/issues/917 for details.
    ********************************************************************************

!!
easy_install.initialize_options(self)
C:\Users\MyName\anaconda3\Lib\site-packages\setuptools_distutils\cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

    ********************************************************************************
    Please avoid running ``setup.py`` directly.
    Instead, use pypa/build, pypa/installer or other
    standards-based tools.

    See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
    ********************************************************************************

!!
self.initialize_options()
running egg_info
writing PharmaPy.egg-info\PKG-INFO
writing dependency_links to PharmaPy.egg-info\dependency_links.txt
writing requirements to PharmaPy.egg-info\requires.txt
writing top-level names to PharmaPy.egg-info\top_level.txt
reading manifest file 'PharmaPy.egg-info\SOURCES.txt'
adding license file 'LICENSE.md'
writing manifest file 'PharmaPy.egg-info\SOURCES.txt'
running build_ext
Creating c:\users\MyName\anaconda3\lib\site-packages\PharmaPy.egg-link (link to .)
PharmaPy 0.0.0 is already the active version in easy-install.pth

Installed c:\users\MyName\desktop\pharmapy-master\pharmapy-master
Processing dependencies for PharmaPy==0.0.0
Searching for assimulo
Reading https://pypi.org/simple/assimulo/
Downloading https://files.pythonhosted.org/packages/28/ef/4d8b15a0842410bb4ca8f500dadd5ff76fb3e34559f956a51c19b8a4912b/Assimulo-3.0.tar.gz#sha256=61cdca4562745078c966cc4fab44d8bc0db11a9e6856b45c470ac65c16af9e8a
Best match: Assimulo 3.0
Processing Assimulo-3.0.tar.gz
Writing C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\setup.cfg
Running Assimulo-3.0\setup.py -q bdist_egg --dist-dir C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\egg-dist-tmp-bygjrr4g
C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\setup.py:75: DeprecationWarning:

numpy.distutils is deprecated since NumPy 1.23.0, as a result
of the deprecation of distutils itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use setuptools < 60.0 for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html

import numpy.distutils as nd
No path to BLAS supplied, disabling support. View more information using --log=DEBUG
No path to SuperLU supplied, disabling support. View more information using --log=DEBUG
Could not find Sundials, check the provided path (--sundials-home=) to see that it actually points to Sundials.
No path to LAPACK supplied, disabling support. View more information using --log=DEBUG
Compiling assimulo\algebraic.pyx because it changed.
Compiling assimulo\explicit_ode.pyx because it changed.
Compiling assimulo\implicit_ode.pyx because it changed.
Compiling assimulo\ode.pyx because it changed.
Compiling assimulo\problem.pyx because it changed.
Compiling assimulo\special_systems.pyx because it changed.
Compiling assimulo\support.pyx because it changed.
[1/7] Cythonizing assimulo\algebraic.pyx
C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\assimulo\algebraic.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: assimulo\constants.pxi:35:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:36:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:37:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:38:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:39:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:49:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:50:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:51:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:52:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:53:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
[2/7] Cythonizing assimulo\explicit_ode.pyx
C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\assimulo\explicit_ode.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: assimulo\constants.pxi:35:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:36:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:37:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:38:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:39:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:49:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:50:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:51:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:52:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:53:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
[3/7] Cythonizing assimulo\implicit_ode.pyx
C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\assimulo\implicit_ode.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: assimulo\constants.pxi:35:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:36:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:37:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:38:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:39:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:49:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:50:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:51:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:52:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:53:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
[4/7] Cythonizing assimulo\ode.pyx
C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\assimulo\ode.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
warning: assimulo\constants.pxi:35:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:36:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:37:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:38:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:39:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:49:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:50:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:51:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:52:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
warning: assimulo\constants.pxi:53:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See cython/cython#4310
Traceback (most recent call last):
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 156, in save_modules
yield saved
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 198, in setup_context
yield
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 259, in run_setup
_execfile(setup_script, ns)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 46, in _execfile
exec(code, globals, locals)
File "C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\setup.py", line 543, in
File "C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\setup.py", line 407, in cython_extensionlists
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Build\Dependencies.py", line 1134, in cythonize
cythonize_one(*args)
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Build\Dependencies.py", line 1280, in cythonize_one
result = compile_single(pyx_file, options, full_module_name=full_module_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py", line 615, in compile_single
return run_pipeline(source, options, full_module_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py", line 539, in run_pipeline
err, enddata = Pipeline.run_pipeline(pipeline, source)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Pipeline.py", line 398, in run_pipeline
data = run(phase, data)
^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Pipeline.py", line 375, in run
return phase(data)
^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Pipeline.py", line 34, in parse
tree = context.parse(source_desc, scope, pxd = 0, full_module_name = full_module_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py", line 381, in parse
tree = Parsing.p_module(s, pxd, full_module_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "Cython\Compiler\Parsing.py", line 3910, in Cython.Compiler.Parsing.p_module
File "Cython\Compiler\Parsing.py", line 3929, in Cython.Compiler.Parsing.p_module
File "Cython\Compiler\Parsing.py", line 2458, in Cython.Compiler.Parsing.p_statement_list
File "Cython\Compiler\Parsing.py", line 2389, in Cython.Compiler.Parsing.p_statement
File "Cython\Compiler\Parsing.py", line 3245, in Cython.Compiler.Parsing.p_cdef_statement
File "Cython\Compiler\Parsing.py", line 3725, in Cython.Compiler.Parsing.p_c_class_definition
File "Cython\Compiler\Parsing.py", line 2483, in Cython.Compiler.Parsing.p_suite_with_docstring
File "Cython\Compiler\Parsing.py", line 2458, in Cython.Compiler.Parsing.p_statement_list
File "Cython\Compiler\Parsing.py", line 2389, in Cython.Compiler.Parsing.p_statement
File "Cython\Compiler\Parsing.py", line 3258, in Cython.Compiler.Parsing.p_cdef_statement
File "Cython\Compiler\Parsing.py", line 3500, in Cython.Compiler.Parsing.p_c_func_or_var_declaration
File "Cython\Compiler\Parsing.py", line 2483, in Cython.Compiler.Parsing.p_suite_with_docstring
File "Cython\Compiler\Parsing.py", line 2458, in Cython.Compiler.Parsing.p_statement_list
File "Cython\Compiler\Parsing.py", line 2431, in Cython.Compiler.Parsing.p_statement
File "Cython\Compiler\Parsing.py", line 1943, in Cython.Compiler.Parsing.p_for_statement
File "Cython\Compiler\Parsing.py", line 2472, in Cython.Compiler.Parsing.p_suite
File "Cython\Compiler\Parsing.py", line 2483, in Cython.Compiler.Parsing.p_suite_with_docstring
File "Cython\Compiler\Parsing.py", line 2458, in Cython.Compiler.Parsing.p_statement_list
File "Cython\Compiler\Parsing.py", line 2450, in Cython.Compiler.Parsing.p_statement
File "Cython\Compiler\Parsing.py", line 2290, in Cython.Compiler.Parsing.p_simple_statement_list
File "Cython\Compiler\Scanning.py", line 537, in Cython.Compiler.Scanning.PyrexScanner.expect_newline
File "Cython\Compiler\Scanning.py", line 506, in Cython.Compiler.Scanning.PyrexScanner.expect
File "Cython\Compiler\Scanning.py", line 516, in Cython.Compiler.Scanning.PyrexScanner.expected
File "Cython\Compiler\Scanning.py", line 493, in Cython.Compiler.Scanning.PyrexScanner.error
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Errors.py", line 181, in error
report_error(err)
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Errors.py", line 149, in report_error
error_stack = threadlocal.cython_errors_stack
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: '_thread._local' object has no attribute 'cython_errors_stack'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "C:\Users\MyName\Desktop\PharmaPy-master\PharmaPy-master\setup.py", line 15, in
setup(name='PharmaPy',
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools_init_.py", line 107, in setup
return distutils.core.setup(**attrs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools_distutils\core.py", line 185, in setup
return run_commands(dist)
^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools_distutils\core.py", line 201, in run_commands
dist.run_commands()
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools_distutils\dist.py", line 969, in run_commands
self.run_command(cmd)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\dist.py", line 1234, in run_command
super().run_command(command)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools_distutils\dist.py", line 988, in run_command
cmd_obj.run()
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\develop.py", line 34, in run
self.install_for_development()
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\develop.py", line 126, in install_for_development
self.process_distribution(None, self.dist, not self.no_deps)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\easy_install.py", line 750, in process_distribution
distros = WorkingSet([]).resolve(
^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\pkg_resources_init_.py", line 829, in resolve
dist = self.resolve_dist(
^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\pkg_resources_init.py", line 865, in resolve_dist
dist = best[req.key] = env.best_match(
^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\pkg_resources_init.py", line 1135, in best_match
return self.obtain(req, installer)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\pkg_resources_init_.py", line 1147, in obtain
return installer(requirement)
^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\easy_install.py", line 677, in easy_install
return self.install_item(spec, dist.location, tmpdir, deps)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\easy_install.py", line 703, in install_item
dists = self.install_eggs(spec, download, tmpdir)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\easy_install.py", line 896, in install_eggs
return self.build_and_install(setup_script, setup_base)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\easy_install.py", line 1170, in build_and_install
self.run_setup(setup_script, setup_base, args)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\command\easy_install.py", line 1154, in run_setup
run_setup(setup_script, args)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 249, in run_setup
with setup_context(setup_dir):
File "C:\Users\MyName\anaconda3\Lib\contextlib.py", line 155, in exit
self.gen.throw(typ, value, traceback)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 190, in setup_context
with save_modules():
File "C:\Users\MyName\anaconda3\Lib\contextlib.py", line 155, in exit
self.gen.throw(typ, value, traceback)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 169, in save_modules
saved_exc.resume()
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 143, in resume
raise exc.with_traceback(self._tb)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 156, in save_modules
yield saved
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 198, in setup_context
yield
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 259, in run_setup
_execfile(setup_script, ns)
File "C:\Users\MyName\anaconda3\Lib\site-packages\setuptools\sandbox.py", line 46, in _execfile
exec(code, globals, locals)
File "C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\setup.py", line 543, in
File "C:\Users\RyanConner\AppData\Local\Temp\easy_install-531510lj\Assimulo-3.0\setup.py", line 407, in cython_extensionlists
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Build\Dependencies.py", line 1134, in cythonize
cythonize_one(*args)
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Build\Dependencies.py", line 1280, in cythonize_one
result = compile_single(pyx_file, options, full_module_name=full_module_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py", line 615, in compile_single
return run_pipeline(source, options, full_module_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py", line 539, in run_pipeline
err, enddata = Pipeline.run_pipeline(pipeline, source)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Pipeline.py", line 398, in run_pipeline
data = run(phase, data)
^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Pipeline.py", line 375, in run
return phase(data)
^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Pipeline.py", line 34, in parse
tree = context.parse(source_desc, scope, pxd = 0, full_module_name = full_module_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Main.py", line 381, in parse
tree = Parsing.p_module(s, pxd, full_module_name)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "Cython\Compiler\Parsing.py", line 3910, in Cython.Compiler.Parsing.p_module
File "Cython\Compiler\Parsing.py", line 3929, in Cython.Compiler.Parsing.p_module
File "Cython\Compiler\Parsing.py", line 2458, in Cython.Compiler.Parsing.p_statement_list
File "Cython\Compiler\Parsing.py", line 2389, in Cython.Compiler.Parsing.p_statement
File "Cython\Compiler\Parsing.py", line 3245, in Cython.Compiler.Parsing.p_cdef_statement
File "Cython\Compiler\Parsing.py", line 3725, in Cython.Compiler.Parsing.p_c_class_definition
File "Cython\Compiler\Parsing.py", line 2483, in Cython.Compiler.Parsing.p_suite_with_docstring
File "Cython\Compiler\Parsing.py", line 2458, in Cython.Compiler.Parsing.p_statement_list
File "Cython\Compiler\Parsing.py", line 2389, in Cython.Compiler.Parsing.p_statement
File "Cython\Compiler\Parsing.py", line 3258, in Cython.Compiler.Parsing.p_cdef_statement
File "Cython\Compiler\Parsing.py", line 3500, in Cython.Compiler.Parsing.p_c_func_or_var_declaration
File "Cython\Compiler\Parsing.py", line 2483, in Cython.Compiler.Parsing.p_suite_with_docstring
File "Cython\Compiler\Parsing.py", line 2458, in Cython.Compiler.Parsing.p_statement_list
File "Cython\Compiler\Parsing.py", line 2431, in Cython.Compiler.Parsing.p_statement
File "Cython\Compiler\Parsing.py", line 1943, in Cython.Compiler.Parsing.p_for_statement
File "Cython\Compiler\Parsing.py", line 2472, in Cython.Compiler.Parsing.p_suite
File "Cython\Compiler\Parsing.py", line 2483, in Cython.Compiler.Parsing.p_suite_with_docstring
File "Cython\Compiler\Parsing.py", line 2458, in Cython.Compiler.Parsing.p_statement_list
File "Cython\Compiler\Parsing.py", line 2450, in Cython.Compiler.Parsing.p_statement
File "Cython\Compiler\Parsing.py", line 2290, in Cython.Compiler.Parsing.p_simple_statement_list
File "Cython\Compiler\Scanning.py", line 537, in Cython.Compiler.Scanning.PyrexScanner.expect_newline
File "Cython\Compiler\Scanning.py", line 506, in Cython.Compiler.Scanning.PyrexScanner.expect
File "Cython\Compiler\Scanning.py", line 516, in Cython.Compiler.Scanning.PyrexScanner.expected
File "Cython\Compiler\Scanning.py", line 493, in Cython.Compiler.Scanning.PyrexScanner.error
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Errors.py", line 181, in error
report_error(err)
File "C:\Users\MyName\anaconda3\Lib\site-packages\Cython\Compiler\Errors.py", line 149, in report_error
error_stack = threadlocal.cython_errors_stack
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: '_thread._local' object has no attribute 'cython_errors_stack'
Done!
(base) PS C:\Users\MyName\Desktop\PharmaPy-master\PharmaPy-master> conda activate PharmaPytry

EnvironmentNameNotFound: Could not find conda environment: PharmaPytry
You can list all discoverable environments with conda info --envs.

Invoke-Expression : Cannot bind argument to parameter 'Command' because it is an empty string.
At C:\Users\MyName\anaconda3\shell\condabin\Conda.psm1:76 char:36

•     Invoke-Expression -Command $activateCommand;
  

•                                ~~~~~~~~~~~~~~~~
  

  • CategoryInfo : InvalidData: (:) [Invoke-Expression], ParameterBindingValidationException
  • FullyQualifiedErrorId : ParameterArgumentValidationErrorEmptyStringNotAllowed,Microsoft.PowerShell.Commands.Invo
    keExpressionCommand

(base) PS C:\Users\MyName\Desktop\PharmaPy-master\PharmaPy-master> conda activate PharmaPyTry

EnvironmentNameNotFound: Could not find conda environment: PharmaPyTry
You can list all discoverable environments with conda info --envs.

Invoke-Expression : Cannot bind argument to parameter 'Command' because it is an empty string.
At C:\Users\MyName\anaconda3\shell\condabin\Conda.psm1:76 char:36

•     Invoke-Expression -Command $activateCommand;
  

•                                ~~~~~~~~~~~~~~~~
  

  • CategoryInfo : InvalidData: (:) [Invoke-Expression], ParameterBindingValidationException
  • FullyQualifiedErrorId : ParameterArgumentValidationErrorEmptyStringNotAllowed,Microsoft.PowerShell.Commands.Invo
    keExpressionCommand

[djlaky]

We are aware of installation issues and are currently working on a pull request that should be available in the master branch soon. Sorry for the inconvenience! Keep an eye on #91