BIDS Validation failing due to lru_cache

[pollaro]

What happened?

I added a step in the Dockerfile to copy over some matlab code that I edited. Just one m file.
I built the Dockerfile.
When I run the container/image that's created I get:

  File "/app/run.py", line 33, in <module>
    from helpers import read_bids_dataset, validate_config, validate_license
  File "/app/helpers.py", line 6, in <module>
    from bids.layout import BIDSLayout
  File "/usr/local/lib/python3.6/dist-packages/bids/__init__.py", line 3, in <module>
    from .layout import BIDSLayout
  File "/usr/local/lib/python3.6/dist-packages/bids/layout/__init__.py", line 1, in <module>
    from .layout import BIDSLayout, add_config_paths, parse_file_entities
  File "/usr/local/lib/python3.6/dist-packages/bids/layout/layout.py", line 20, in <module>
    from .index import BIDSLayoutIndexer
  File "/usr/local/lib/python3.6/dist-packages/bids/layout/index.py", line 11, in <module>
    from bids_validator import BIDSValidator
  File "/usr/local/lib/python3.6/dist-packages/bids_validator/__init__.py", line 2, in <module>
    from .bids_validator import BIDSValidator
  File "/usr/local/lib/python3.6/dist-packages/bids_validator/bids_validator.py", line 8, in <module>
    class BIDSValidator():
  File "/usr/local/lib/python3.6/dist-packages/bids_validator/bids_validator.py", line 124, in BIDSValidator
    @lru_cache
  File "/usr/lib/python3.6/functools.py", line 477, in lru_cache
    raise TypeError('Expected maxsize to be an integer or None')
TypeError: Expected maxsize to be an integer or None

What command did you use?

docker run --rm --user="<user_#>:<group_#>" -v <data_in>:/bids_input:ro -v <data_out>:/output -v freesurfer/license.txt:/license.txt:ro edited_abcd-hcp-pipeline /bids_input /output --freesurfer-license=/opt/freesurfer/license.txt --ncpus=12 --participant-label=02

What version of the abcd-hcp pipeline are you using?

latest

Directory Structure

No response

Relevant log output

No response

Add any additional information or context about the problem here.

I ran the command with the dcanumn/abcd-hcp-pipeline and it works. I don't understand why copying one m-file causes a python error

[madisoth]

Looks like in addition to pybids we need to pin the bids-validator version, probably to 1.14.0 (which is what's in our v0.1.4 Dockerhub build)

This update looks like the one that broke things on our end: bids-standard/bids-validator@5a3ab0b