references.bib

@book{citeulike:3000004,
    abstract = {{The way information is stored, retrieved and displayed is changing. Simple
bibliographic databases are giving way to unregulated and unorganized
multimedia data repositories, which can give the user great difficulty when
searching for information. A methodology is needed to keep all of this
information in its various forms retrievable. This is the first modern survey
of the field of information storage and retrieval to discuss how to work with
information in all its varying forms. It shows information professionals how
to handle full-text, graphics, video and audio, and how to distribute these
massive databases over networks. Contents same as US/UK editions.}},
    author = {Korfhage, Robert R.},
    citeulike-article-id = {3000004},
    citeulike-linkout-0 = {http://www.amazon.de/exec/obidos/redirect?tag=citeulike01-21\&path=ASIN/9758666096},
    citeulike-linkout-1 = {http://www.worldcat.org/isbn/9758666096},
    citeulike-linkout-2 = {http://books.google.com/books?vid=ISBN9758666096},
    citeulike-linkout-3 = {http://www.amazon.com/gp/search?keywords=9758666096\&index=books\&linkCode=qs},
    citeulike-linkout-4 = {http://www.librarything.com/isbn/9758666096},
    edition = {1st},
    howpublished = {Taschenbuch},
    isbn = {9758666096},
    keywords = {algorithm, programming},
    posted-at = {2008-07-14 19:26:03},
    priority = {2},
    publisher = {Wiley},
    title = {{Information Storage and Retrieval}},
    url = {http://www.worldcat.org/isbn/9758666096}
}

@article {springerlink:10.1023/A:1008764508237,

   author = {Klein, Mark and Dellarocas, Chrysanthos and Bernstein, Abraham},
   title = {Introduction to the Special Issue on Adaptive Workflow Systems},

   journal = {Computer Supported Cooperative Work (CSCW)},
   publisher = {Springer Netherlands},
   issn = {0925-9724},
   keyword = {Computer Science},
   pages = {265-267},
   volume = {9},
   issue = {3},
   url = {http://dx.doi.org/10.1023/A:1008764508237},
   note = {10.1023/A:1008764508237},
   year = {2000}
}

@article{Suchman:1983:OPP:357442.357445,
 author = {Suchman, Lucy A.},
 title = {Office procedure as practical action: models of work and system design},
 journal = {ACM Trans. Inf. Syst.},
 issue_date = {Oct. 1983},
 volume = {1},
 number = {4},
 month = oct,
 year = {1983},
 issn = {1046-8188},
 pages = {320--328},
 numpages = {9},
 url = {http://doi.acm.org/10.1145/357442.357445},
 doi = {10.1145/357442.357445},
 acmid = {357445},
 publisher = {ACM},
 address = {New York, NY, USA},
}

@article{vanderAalst2002125,
    title = "Inheritance of workflows: an approach to tackling pdaCruz:2008:OSW:1363686.136398oroblems related to change",
    journal = "Theoretical Computer Science",
    volume = "270",
    number = "1–2",
    pages = "125 - 203",
    year = "2002",
    note = "",
    issn = "0304-3975",
    doi = "10.1016/S0304-3975(00)00321-2",
    url = "http://www.sciencedirect.com/science/article/pii/S0304397500003212",
    author = "W.M.P van der Aalst and T Basten",
    keywords = "Workflow management",
    keywords = "Petri nets",
    keywords = "Inheritance",
    keywords = "Adaptive workflow",
    keywords = "Dynamic change",
    keywords = "Management information",
    abstract = "Inheritance is one of the key issues of object-orientation. The inheritance mechanism allows for the definition of a subclass which inherits the features of a specific superclass. When adapting a workflow process definition to specific needs (ad-hoc change) or changing the structure of the workflow process as a result of reengineering efforts (evolutionary change), inheritance concepts are useful to check whether the new workflow process inherits some desirable properties of the old workflow process. Today's workflow management systems have problems dealing with both ad-hoc changes and evolutionary changes. As a result, a workflow management system is not used to support dynamically changing workflow processes or the workflow processes are supported in a rigid manner, i.e., changes are not allowed or handled outside of the workflow management system. In this paper, we propose inheritance-preserving transformation rules for workflow processes and show that these rules can be used to avoid problems such as the “dynamic-change bug.” The dynamic-change bug refers to errors introduced by migrating a case (i.e., a process instance) from an old process definition to a new one. A transfer from an old process to a new process can lead to duplication of work, skipping of tasks, deadlocks, and livelocks. Restricting change to the inheritance-preserving transformation rules guarantees transfers without any of these problems. Moreover, the transformation rules can also be used to extract aggregate management information in case more than one version of a workflow process cannot be avoided."
}

@book{Taylor:2006:WES:1196459,
 author = {Taylor, Ian J. and Deelman, Ewa and Gannon, Dennis B. and Shields, Matthew},
 title = {Workflows for e-Science: Scientific Workflows for Grids},
 year = {2006},
 isbn = {1846285194},
 publisher = {Springer-Verlag New York, Inc.},
 address = {Secaucus, NJ, USA},
}

@inproceedings{Aragon:2009:WMH:1529282.1529491,
 author = {Aragon, Cecilia R. and Runge, Karl J.},
 title = {Workflow management for high volume supernova search},
 booktitle = {Proceedings of the 2009 ACM symposium on Applied Computing},
 series = {SAC '09},
 year = {2009},
 isbn = {978-1-60558-166-8},
 location = {Honolulu, Hawaii},
 pages = {949--955},
 numpages = {7},
 url = {http://doi.acm.org/10.1145/1529282.1529491},
 doi = {10.1145/1529282.1529491},
 acmid = {1529491},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {astronomy, astrophysics, data transfer, high-volume data flows, workflow management},
}


@ARTICLE{4721191,
    author={De Roure, D. and Goble, C.},
    journal={Software, IEEE}, title={Software Design for Empowering Scientists},
    year={2009},
    month={jan.-feb. },
    volume={26},
    number={1},
    pages={88 -95},
    abstract={Scientific research is increasingly digital. Some activities, such as data analysis, search, and simulation, can be accelerated by letting scientists write workflows and scripts that automate routine activities. These capture pieces of the scientific method that scientists can share. The Taverna Workbench, a widely deployed scientific-workflow-management system, together with the myExperiment social Web site for sharing scientific experiments, follow six principles of designing software for adoption by scientists and six principles of user engagement.},
    keywords={Taverna Workbench;scientific method;scientific research;scientific workflow management system;scientists;social Web site;software design;scientific information systems;software engineering;},
    doi={10.1109/MS.2009.22},
    ISSN={0740-7459},}

@inproceedings{Moenne-Loccoz:2004:MVC:1039470.1039484,
 author = {Mo\"{e}nne-Loccoz, Nicolas and Janvier, Bruno and Marchand-Maillet, St{\'e}phane and Bruno, Eric},
 title = {Managing video collections at large},
 booktitle = {Proceedings of the 1st international workshop on Computer vision meets databases},
 series = {CVDB '04},
 year = {2004},
 isbn = {1-58113-917-9},
 location = {Paris, France},
 pages = {59--66},
 numpages = {8},
 url = {http://doi.acm.org/10.1145/1039470.1039484},
 doi = {10.1145/1039470.1039484},
 acmid = {1039484},
 publisher = {ACM},
 address = {New York, NY, USA},
}

@inproceedings{Brahe:2007:SWW:1316624.1316661,
 author = {Brahe, Steen and Schmidt, Kjeld},
 title = {The story of a working workflow management system},
 booktitle = {Proceedings of the 2007 international ACM conference on Supporting group work},
 series = {GROUP '07},
 year = {2007},
 isbn = {978-1-59593-845-9},
 location = {Sanibel Island, Florida, USA},
 pages = {249--258},
 numpages = {10},
 url = {http://doi.acm.org/10.1145/1316624.1316661},
 doi = {10.1145/1316624.1316661},
 acmid = {1316661},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {BPEL, business process management (BPM), case study, service oriented architecture (SOA), workflow management (WFM)},
}

@inproceedings{vanderAalst:2001:BWM:500286.500296,
 author = {van der Aalst, W. M. P. and Berens, P. J. S.},
 title = {Beyond workflow management: product-driven case handling},
 booktitle = {Proceedings of the 2001 International ACM SIGGROUP Conference on Supporting Group Work},
 series = {GROUP '01},
 year = {2001},
 isbn = {1-58113-294-8},
 location = {Boulder, Colorado, USA},
 pages = {42--51},
 numpages = {10},
 url = {http://doi.acm.org/10.1145/500286.500296},
 doi = {10.1145/500286.500296},
 acmid = {500296},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {FLOWer, case handling, product-driven design, workflow management, workflow management systems},
}

@article{Shegalov:2001:XWM:767132.767139,
 author = {Shegalov, German and Gillmann, Michael and Weikum, Gerhard},
 title = {XML-enabled workflow management for e-services across heterogeneous platforms},
 journal = {The VLDB Journal},
 issue_date = {August 2001},
 volume = {10},
 number = {1},
 month = aug,
 year = {2001},
 issn = {1066-8888},
 pages = {91--103},
 numpages = {13},
 url = {http://dl.acm.org/citation.cfm?id=767132.767139},
 acmid = {767139},
 publisher = {Springer-Verlag New York, Inc.},
 address = {Secaucus, NJ, USA},
 keywords = {Business processes, Information system interoperability, Internet e-services, Workflow management, XML/XSL},
}

@INPROCEEDINGS{5407993,
author={Johnson, D. and Meacham, K. and Kornmayer, H.},
booktitle={E-Science Workshops, 2009 5th IEEE International Conference on}, title={A middleware independent Grid workflow builder for scientific applications},
year={2009},
month={dec.},
volume={},
number={},
pages={86 -91},
abstract={Grid workflow authoring tools are typically specific to particular workflow engines built into grid middleware, or are application specific and are designed to interact with specific software implementations. g-Eclipse is a middleware independent grid workbench that aims to provide a unified abstraction of the grid and includes a grid workflow builder to allow users to author and deploy workflows to the grid. This paper describes the g-Eclipse Workflow Builder and its implementations for two grid middlewares, gLite and GRIA, and a case study utilizing the workflow builder in a grid user's scientific workflow deployment.},
keywords={GRIA;g-Eclipse Workflow Builder;gLite;grid middleware;grid workflow authoring tools;middleware independent grid workbench;middleware independent grid workflow builder;scientific applications;scientific workflow deployment;software implementations;workflow engines;grid computing;middleware;scientific information systems;software engineering;workflow management software;},
doi={10.1109/ESCIW.2009.5407993},
ISSN={},}

@article {springerlink:10.1007/BF00136712,
   author = {Carstensen, Peter H. and Sørensen, Carsten},
   title = {From the social to the systematic},
   journal = {Computer Supported Cooperative Work (CSCW)},
   publisher = {Springer Netherlands},
   issn = {0925-9724},
   keyword = {Computer Science},
   pages = {387-413},
   volume = {5},
   issue = {4},
   url = {http://dx.doi.org/10.1007/BF00136712},
   note = {10.1007/BF00136712},
   abstract = {Large design and manufacturing projects are conducted in elaborate settings. Interdependent specialists work together, building complex systems. A substantial part of their daily work concerns the coordination of distributed work. This paper reports from a field study at Foss Electric, a Danish manufacturing company, where the development of an instrument for testing the quality of raw milk was studied. Scheduled and informal project meetings together with paper-based coordination systems were the primary means of managing the complexity of coordinating work within the project. This paper investigates the origination, use, and function of these coordination mechanisms applying a Coordination Mechanism perspective (Schmidt and Simone, 1996). We argue that the complexity of coordinating distributed work in large design projects result in the adoption of coordination systems. These systems formalize aspects of coordination work through artifacts, procedures for use and conventions.},
   year = {1996}

}

@inproceedings{DiMartino:2007:TAG:1341012.1341081,
 author = {Di Martino, S. and Ferrucci, F. and Paolino, L. and Sebillo, M. and Tortora, G. and Vitiello, G. and Avagliano, G.},
 title = {Towards the automatic generation of web GIS},
 booktitle = {Proceedings of the 15th annual ACM international symposium on Advances in geographic information systems},
 series = {GIS '07},
 year = {2007},
 isbn = {978-1-59593-914-2},
 location = {Seattle, Washington},
 pages = {57:1--57:4},
 articleno = {57},
 numpages = {4},
 url = {http://doi.acm.org/10.1145/1341012.1341081},
 doi = {10.1145/1341012.1341081},
 acmid = {1341081},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {design models, web GIS, web applications},
}

@inproceedings{ElAdnani:2001:MLF:512161.512177,
 author = {El Adnani, Mohamed and Y{\'e}tongnon, Kokou and Benslimane, Djamal},
 title = {A multiple layered functional data model to support multiple representations and interoperability of GIS: application to urban management systems},
 booktitle = {Proceedings of the 9th ACM international symposium on Advances in geographic information systems},
 series = {GIS '01},
 year = {2001},
 isbn = {1-58113-443-6},
 location = {Atlanta, Georgia, USA},
 pages = {70--75},
 numpages = {6},
 url = {http://doi.acm.org/10.1145/512161.512177},
 doi = {10.1145/512161.512177},
 acmid = {512177},
 publisher = {ACM},
 address = {New York, NY, USA},
}

@inproceedings{Simmhan:2009:BTS:1673063.1673121,
 author = {Simmhan, Yogesh and Barga, Roger and Ingen, Catharine van and Lazowska, Ed and Szalay, Alex},
 title = {Building the Trident Scientific Workflow Workbench for Data Management in the Cloud},
 booktitle = {Proceedings of the 2009 Third International Conference on Advanced Engineering Computing and Applications in Sciences},
 series = {ADVCOMP '09},
 year = {2009},
 isbn = {978-0-7695-3829-7},
 pages = {41--50},
 numpages = {10},
 url = {http://dx.doi.org/10.1109/ADVCOMP.2009.14},
 doi = {10.1109/ADVCOMP.2009.14},
 acmid = {1673121},
 publisher = {IEEE Computer Society},
 address = {Washington, DC, USA},
 keywords = {scientific workflows, cloud computing, scientific data management, applications in eScience},
}

@article{Simmhan2011790,
title = "Analysis of approaches for supporting the Open Provenance Model: A case study of the Trident workflow workbench",
journal = "Future Generation Computer Systems",
volume = "27",
number = "6",
pages = "790 - 796",
year = "2011",
note = "",
issn = "0167-739X",
doi = "10.1016/j.future.2010.10.005",
url = "http://www.sciencedirect.com/science/article/pii/S0167739X10001986",
author = "Yogesh Simmhan and Roger Barga",
keywords = "Provenance challenge",
keywords = "Scientific workflows",
keywords = "System integration",
keywords = "Analysis",
keywords = "Interoperability",
abstract = "The Trident workbench is a platform for composing, executing and managing scientific workflows. While Trident collects provenance in its native provenance model, the third provenance challenge was an opportunity to build support for the Open Provenance Model into Trident. There are several possible approaches to harmonize our native model with OPM, and such choices are also available to other existing provenance and workflow systems working towards OPM compatibility. We identify and analyze the relative merits of these approaches in an effort to inform practitioners planning to support OPM in their existing provenance/workflow systems. Further, we describe our experience with using the integration approach we choose to interoperate with other teams as part of the challenge."
}

@inproceedings{Wang:2009:KHG:1645164.1645176,
 author = {Wang, Jianwu and Crawl, Daniel and Altintas, Ilkay},
 title = {Kepler + Hadoop: a general architecture facilitating data-intensive applications in scientific workflow systems},
 booktitle = {Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science},
 series = {WORKS '09},
 year = {2009},
 isbn = {978-1-60558-717-2},
 location = {Portland, Oregon},
 pages = {12:1--12:8},
 articleno = {12},
 numpages = {8},
 url = {http://doi.acm.org/10.1145/1645164.1645176},
 doi = {10.1145/1645164.1645176},
 acmid = {1645176},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {Hadoop, Kepler, MapReduce, distributed computing, easy-to-use, parallel computing, scientific workflow},
}

@inproceedings{Sanders:2008:SSA:1400549.1400595,
 author = {Sanders, Derek T. and Hamilton,Jr., J. A. and MacDonald, Richard A.},
 title = {Supporting a service-oriented architecture},
 booktitle = {Proceedings of the 2008 Spring simulation multiconference},
 series = {SpringSim '08},
 year = {2008},
 isbn = {1-56555-319-5},
 location = {Ottawa, Canada},
 pages = {325--334},
 numpages = {10},
 url = {http://dl.acm.org/citation.cfm?id=1400549.1400595},
 acmid = {1400595},
 publisher = {Society for Computer Simulation International},
 address = {San Diego, CA, USA},
 keywords = {DoDAF, MoDAF, TOGAF, service-oriented architecture},
}

@inproceedings{daCruz:2008:OSW:1363686.1363983,
 author = {da Cruz, Sergio Manuel Serra and Batista, Vanessa and D\'{a}vila, Alberto M. R. and Silva, Edno and Tosta, Frederico and Vilela, Clarissa and Campos, Maria Luiza M. and Cuadrat, Rafael and Tschoeke, Diogo and Mattoso, Marta},
 title = {OrthoSearch: a scientific workflow approach to detect distant homologies on protozoans},
 booktitle = {Proceedings of the 2008 ACM symposium on Applied computing},
 series = {SAC '08},
 year = {2008},
 isbn = {978-1-59593-753-7},
 location = {Fortaleza, Ceara, Brazil},
 pages = {1282--1286},
 numpages = {5},
 url = {http://doi.acm.org/10.1145/1363686.1363983},
 doi = {10.1145/1363686.1363983},
 acmid = {1363983},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {bioinformatics, provenance, scientific workflows},
}

@inproceedings{Montella:2007:UGC:1272980.1272995,
 author = {Montella, Raffaele and Giunta, Giulio and Riccio, Angelo},
 title = {Using grid computing based components in on demand environmental data delivery},
 booktitle = {Proceedings of the second workshop on Use of P2P, GRID and agents for the development of content networks},
 series = {UPGRADE '07},
 year = {2007},
 isbn = {978-1-59593-718-6},
 location = {Monterey, California, USA},
 pages = {81--86},
 numpages = {6},
 url = {http://doi.acm.org/10.1145/1272980.1272995},
 doi = {10.1145/1272980.1272995},
 acmid = {1272995},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {environmental data distribution, grid computing, resource broking},
}

@inproceedings{Withana:2010:VWE:1851476.1851586,
 author = {Withana, Eran Chinthaka and Plale, Beth and Barga, Roger and Araujo, Nelson},
 title = {Versioning for workflow evolution},
 booktitle = {Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing},
 series = {HPDC '10},
 year = {2010},
 isbn = {978-1-60558-942-8},
 location = {Chicago, Illinois},
 pages = {756--765},
 numpages = {10},
 url = {http://doi.acm.org/10.1145/1851476.1851586},
 doi = {10.1145/1851476.1851586},
 acmid = {1851586},
 publisher = {ACM},
 address = {New York, NY, USA},
 keywords = {evolution, versioning, workflows},
}