scDesign3Py: python interface for scDesign3 R package

About

scDesign3Py is a python interface developed for the scDesign3 R package based on rpy2, enabling python users to easily use the scDesign3 functions and share almost the same usage as the R version.

• For detailed tutorial of this package, please visit the document website.

• To find out more details about scDesign3, you can check out manuscript on Nature Biotechnology:

Song, D., Wang, Q., Yan, G. et al. scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics. Nat Biotechnol (2023).

• For tutorial of R package scDesign3, you can check the scDesign3 tutorial website.

Installation

You can install the most latest version from Github by running the following command

git clone https://github.com/JSB-UCLA/scDesign3Py.git
cd scDesign3Py
pip install .

Or quick install from PyPI:

pip install scDesign3Py

License

This pacakge is licensed under the terms of the MIT License.