This repository contains the data and analysis carried out for the publication:
The bacterial community structure dynamics in Meloidogyne incognita infected roots and its role in worm-microbiome interactions
By:
Timur Yergaliyev, Rivka Alexander-Shani, Hanna Dimeretz, Shimon Pivonia, David Bird, Shimon Rachmilevitch, Amir Szitenberg
See preprint
Data processing and diversity analyses are described in Qiime2_MigMicroDynamics.ipynb nbviewer
Scripts generating figures are provided in Figures.ipynb nbviewer