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MQM-TODO.txt
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MQM-TODO.txt
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"To do" list for MQM part of R/qtl
----------------------------------------------------------------------
This file is intended to contain a list of many of the additions and
revisions that are planned for the MQM part of the R/qtl package.
If you any additions or revisions to suggest, please send an email to
the R/qtl mailing list.
----------------------------------------------------------------------
SHORT TERM:
o Tutorial and man pages
- fix the bibliography (pjotr)
----------------------------------------------------------------------
MEDIUM-SHORT TERM:
o MQM paper
- Plot Cis/Trans on geneexpression set from Arabidopsis
- Circleplot on the same dataset
o Augmentation rewrite to use best N augmentations
o Placement of cofactors for automatic backward selection (perhaps use windowsize)
----------------------------------------------------------------------
MEDIUM TERM:
o 'Environmental' cofactors (Sex,Block,Age, etc)
o Generalized Lineair Models - use R version
o Handling of the X-chromosome
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LONG TERM:
----------------------------------------------------------------------