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Create figure class that visualises marginal posteriors across individuals #26

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DavAug opened this issue Nov 15, 2020 · 1 comment · Fixed by #33
Closed
3 tasks done

Create figure class that visualises marginal posteriors across individuals #26

DavAug opened this issue Nov 15, 2020 · 1 comment · Fixed by #33
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DavAug commented Nov 15, 2020 •
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This figure is not supposed to assess convergence, but compare marginal posteriors across individuals

  • Allow setting a warm up phase that can be excluded from the plot
  • Plots marginal posteriors of individuals next to each other (different chain runs are now taken as one chain)
  • Computes R hat and ESS in hovertext
@DavAug DavAug moved this from To do to In progress in Reproduce modelling results Nov 15, 2020
@DavAug DavAug self-assigned this Nov 15, 2020
This was referenced Nov 16, 2020
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DavAug commented Nov 16, 2020

ESS computation was not added, because current pints function is not very clear on how ESS is computed. Adding ESS computation is pushed to #32 .

@DavAug DavAug mentioned this issue Nov 16, 2020
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@DavAug DavAug moved this from In progress to Done in Reproduce modelling results Nov 16, 2020
@DavAug DavAug mentioned this issue Nov 16, 2020
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Issue 26 marginal posterior plot DavAug/chi
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