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DeepMicroscopy - Generating Deep Insights from Deep Learning in Microscopy

This is our central home for all our digital pathology projects, focusing on deep learning.

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Erlangen, Germany
https://deepmicroscopy.org

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SlideRunner SlideRunner Public

SlideRunner is a tool for massive cell annotations in whole slide images

Python 72 10
Exact Exact Public

An open source online platform for collaborative image labeling of almost everything

JavaScript 54 17
MITOS_WSI_CCMCT MITOS_WSI_CCMCT Public

Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

Jupyter Notebook 28 10
MITOS_WSI_CMC MITOS_WSI_CMC Public

Large-Scale Canine Mammary Carcinoma Dataset for Mitotic Figure Assessment on Whole Slide Images

Jupyter Notebook 21 9
MIDOG MIDOG Public

MItosis DOmain Generalization Challenge 2021/2022

Python 15 5
TUPAC16_AlternativeLabels TUPAC16_AlternativeLabels Public

Alternative training set for the TUPAC16 auxiliary mitotic figure data set

Jupyter Notebook 12 4

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Showing 10 of 29 repositories

EXACT-QueueRunner Public
Repository for EXACT QueueRunner, a service that executes processing for jobs available on EXACT.

Python 1 MIT 2 0 0 Updated Apr 30, 2024
Histopathology-Datasets Public Forked from maduc7/Histopathology-Datasets
Ressources of histopathology datasets

0 20 0 0 Updated Apr 29, 2024
MITOS_WSI_CCMCT Public
Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images

Jupyter Notebook 28 10 0 0 Updated Apr 29, 2024
Exact Public
An open source online platform for collaborative image labeling of almost everything

JavaScript 54 MIT 17 12 1 Updated Apr 28, 2024
QuiltCleaner Public
Automatic cleaning of the QUILT-1M pathology dataset

Jupyter Notebook 1 MIT 0 1 (1 issue needs help) 0 Updated Apr 28, 2024
AIRoV Public

JavaScript 0 0 0 0 Updated Mar 18, 2024
EXACT-Sync Public Forked from ChristianMarzahl/EXACT-Sync
Rest API sync with the EXACT Server https://github.com/ChristianMarzahl/Exact

Python 0 MIT 3 0 0 Updated Feb 13, 2024
FELIX Public
Felinae Evaluation with Layperson and ML Interaction EXperience Dataset (FELIX)

Jupyter Notebook 0 0 0 0 Updated Jan 16, 2024
MIDOGpp Public
A large, multi-domain mitotic Figure Dataset

Python 9 MIT 6 2 0 Updated Dec 1, 2023
SlideRunner Public
SlideRunner is a tool for massive cell annotations in whole slide images

Python 72 GPL-3.0 10 5 2 Updated Oct 4, 2023

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