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Installing coastseg on Win10 #176
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Hi Chris, Thank you! |
I followed the steps outlined in the README.md. I don't get any SSL errors. I usually have no problem doing installs, esp. with conda. Pip is sometimes more of a problem. I don't have a pip .ini, but it is not obvious where I should put it....there is a pip folder in ..\Appdata\local, which is not one of the choices on the search path...and there is something in the cache there from today. I was using the mamba solver...I disabled that, but it did not seem to make any difference. I think it would probably be most efficient to chat and screen share. |
Thank you Chris, I think you're onto something when you mention there's something stuck in cache. The error message mentions the Thank you for your feedback and help. |
Sorry I'm late to the party here. Yes, like Sharon said, I think you may benefit from some housekeeping. I tend to do this regularly:
then try
We have previously verified that storing your
We have TCA stuff in the morning but could help you troubleshoot after 12pm pacific |
I started back at the beginning and I've found a good solution that I'm probably going to put in wiki because its easier. Let me know what you think @dbuscombe-usgs Benefits
Downsides
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Okay I found a much easier way of setting the pip.ini file in 3 easy steps. I bet it will fix this issue.
I updated the wiki with this new method https://github.com/Doodleverse/CoastSeg/wiki/How-to-Install-CoastSeg-with-pip-on-a-secure-network |
Nice work!! Hopefully this fixes it for you, Chris! |
That is great...but I don't have that DOI cert file on either my TIC laptop or my WH workstation. The former is a locked-down machine that works on the VPN, the latter is on our Woods Hole "science network" that piggybacks on the WHOI network, and is not completely locked down. I have admin accounts on both machines. Does the file need to exist? |
Thanks for describing your two setups having that context helps narrow down the possible cause of the issue. That being said its hard to know exactly what the issue is. If the issue is an SSL error aka your network doesn't allow traffic without the cert, then the pip config solution would work. However, in your case it appears the issue you're having is a permissions issue. I'm guessing you already tried the If using the Let's verify a few things to see if the issue is something else
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It's also likely that WH is different, somehow not requiring the .cer file, but something else. Kathy and Julia are already using coastseg in WH, so they may be able to offer some insight |
[This command is no longer in your installation instructions...should it be? At this point, I have pip installed in the environment.]
[That seemed to work...no errors, and jupyter lab runs at this point.] Then I did and got a lot of warnings like the first one, plus:
But after that jupyter lab no longer works:
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Is it that jsonschema error? How do I install the proper version? I tried this, but no changes were made:
Got the same result with: |
OK...finally - did a [Forgot to use the --user flag.] Got this:
So, despite an apparent error, it looks like I have the version I need. And I think I am done. |
Great! Your tenacity paid off. You did encounter some unusual problems, though, so I will use your experience to try to update the instructions. For example, we'll add the For now, we are recommending that you stick with the You may be interested in attending Sharon's next office hours, where she helps usgs coastseg users with issues, discuss bugs and new features. I will let you know when the next one is (within the next 1-2 weeks) |
Thanks to both of you for the help. The --user thing was key. Of course, my GEE account has been disabled, so I had to apply for one with my personal account. But my real interest is in finding Planet imagery and then segmenting it to look at unvegetated areas. Is there any reason Planet can't be added to the pipeline? |
Planet is not a priority yet until we fully explore the other image sources, so is a planned feature for V2. V2 is slated for later this year. I agree it will be really nice to have it, and we're going to make it happen soon I hope! V1 is what we're working towards now (we are close), which will have its own validation/benchmarking. Planet imagery is slated for V2 (as I detail here), along with a bunch of other potential improvements, but in the meantime you can use the CoastSat-Planet toolbox for now https://github.com/ydoherty/CoastSat.PlanetScope for shoreline extraction. Soon, I will update the roadmap in the wiki to reflect this, where I plan to outline the phases of planned coastseg development. Things other than shoreline extraction, such as vegetation detection, will likely be in a future Coastseg version (like, V3) or perhaps might require a slightly different tool, but existing Zoo models are available to you to try once you have your vegetation. Also note that I could connect you with others in the USGS who are already using Planet imagery for mapping vegetation - they are a little ahead of us in terms of developing workflows. |
Ok...it seems like I am on my own....or working with the others that are looking at Planet and veg...is that Nicholas et al.? I am not very interested in shorelines, and I don't think Landsat has enough resolution...not sure about Sentinel 2. So I am interested in tools for identifying satellite images, and then probably using a Zoo model or other approach for veg. I am willing to be a tester for any Planet stuff. |
Note that, after I got mine installed, Filipe put together a coastseg installation on conda-forge. I have not tried it. He was interested in knowing how the CoastSat model was archived. |
I get this error when trying to run the pip install command.
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