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cutmodel.sbml
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cutmodel.sbml
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<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" level="2" version="4">
<model>
<listOfCompartments>
<compartment id="compartment" size="1" constant="true"/>
</listOfCompartments>
<listOfSpecies>
<species id="Species0" name="Ethanol" compartment="compartment" initialAmount="2.5e-05" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p title="Unit">M</p>
</body>
</notes>
</species>
<species id="Species1" name="NAD+" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="Species2" name="Acetaldehyde" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="Species3" name="H+" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="Species4" name="NADH" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="Species6" name="S-(Hydroxymethyl)glutathione" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
<species id="Species7" name="S-Formylglutathione" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/>
</listOfSpecies>
<listOfReactions>
<reaction id="Reaction1" name="[ADH5 oxidises S-HMGSH to S-FGSH]" reversible="false" fast="false">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p title="Kinetic mechanism type">Michaelis-Menten</p>
</body>
</notes>
<listOfReactants>
<speciesReference species="Species1" stoichiometry="1"/>
<speciesReference species="Species6" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference species="Species7" stoichiometry="1"/>
<speciesReference species="Species3" stoichiometry="1"/>
<speciesReference species="Species4" stoichiometry="1"/>
</listOfProducts>
<kineticLaw>
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p title="Rate equation">Vmax*A/(Km+A)</p>
</body>
</notes>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<divide/>
<apply>
<times/>
<ci> Vmax </ci>
<ci> A </ci>
</apply>
<apply>
<plus/>
<ci> Km </ci>
<ci> A </ci>
</apply>
</apply>
</math>
<listOfParameters>
<parameter id="Vmax" value="5e-07">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p title="Units">mol*s^(-1)*g^(-1)</p>
</body>
</notes>
</parameter>
<parameter id="Km" value="0.0002">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p title="Units">M</p>
</body>
</notes>
</parameter>
<parameter id="A">
<notes>
<body xmlns="http://www.w3.org/1999/xhtml">
<p title="Warning">No units/values</p>
</body>
</notes>
</parameter>
</listOfParameters>
</kineticLaw>
</reaction>
</listOfReactions>
</model>
</sbml>