/
amphx.obo
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amphx.obo
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format-version: 1.2
data-version: amphx/releases/2020-12-18/amphx.owl
ontology: amphx/amphx
property_value: http://purl.org/dc/elements/1.1/description "An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum)." xsd:string
property_value: http://purl.org/dc/elements/1.1/title "Amphioxus Development and Anatomy Ontology (AMPHX)" xsd:string
property_value: http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/3.0/
[Term]
id: AMPHX:0000001
name: gametogenesis
xref: NCIT:C16599
is_a: UBERON:0000105 ! life cycle stage
[Term]
id: AMPHX:0000002
name: oogenesis
xref: NCIT:C16938
relationship: BFO:0000050 AMPHX:0000001 ! part of gametogenesis
[Term]
id: AMPHX:0000003
name: spermatogenesis
relationship: BFO:0000050 AMPHX:0000001 ! part of gametogenesis
[Term]
id: AMPHX:0000004
name: gamete stage
is_a: UBERON:0000105 ! life cycle stage
relationship: RO:0002087 AMPHX:0000001 ! immediately preceded by gametogenesis
[Term]
id: AMPHX:0000005
name: unfertilized egg stage
relationship: BFO:0000050 AMPHX:0000004 ! part of gamete stage
relationship: RO:0002087 AMPHX:0000002 ! immediately preceded by oogenesis
[Term]
id: AMPHX:0000006
name: spermatozoid stage
relationship: BFO:0000050 AMPHX:0000004 ! part of gamete stage
relationship: RO:0002087 AMPHX:0000003 ! immediately preceded by spermatogenesis
[Term]
id: AMPHX:0000007
name: embryonic development
xref: UBERON:0000068
is_a: UBERON:0000105 ! life cycle stage
relationship: RO:0002087 AMPHX:0000004 ! immediately preceded by gamete stage
[Term]
id: AMPHX:0000008
name: zygote period
xref: UBERON:0000106
relationship: BFO:0000050 AMPHX:0000007 ! part of embryonic development
[Term]
id: AMPHX:0000009
name: cleavage period
xref: UBERON:0000107
relationship: BFO:0000050 AMPHX:0000007 ! part of embryonic development
relationship: RO:0002087 AMPHX:0000008 ! immediately preceded by zygote period
[Term]
id: AMPHX:0000010
name: blastula period
xref: UBERON:0000108
relationship: BFO:0000050 AMPHX:0000007 ! part of embryonic development
relationship: RO:0002087 AMPHX:0000009 ! immediately preceded by cleavage period
[Term]
id: AMPHX:0000011
name: gastrula period
xref: UBERON:0000109
relationship: BFO:0000050 AMPHX:0000007 ! part of embryonic development
relationship: RO:0002087 AMPHX:0000010 ! immediately preceded by blastula period
[Term]
id: AMPHX:0000012
name: neurula period
xref: UBERON:0000110
relationship: BFO:0000050 AMPHX:0000007 ! part of embryonic development
relationship: RO:0002087 AMPHX:0000011 ! immediately preceded by gastrula period
[Term]
id: AMPHX:0000013
name: tailbud period
relationship: BFO:0000050 AMPHX:0000007 ! part of embryonic development
relationship: RO:0002087 AMPHX:0000012 ! immediately preceded by neurula period
[Term]
id: AMPHX:0000014
name: larval development
xref: UBERON:0000069
is_a: UBERON:0000105 ! life cycle stage
relationship: RO:0002087 AMPHX:0000007 ! immediately preceded by embryonic development
[Term]
id: AMPHX:0000015
name: larva period
xref: UBERON:0000069
relationship: BFO:0000050 AMPHX:0000014 ! part of larval development
relationship: RO:0002087 AMPHX:0000013 ! immediately preceded by tailbud period
[Term]
id: AMPHX:0000016
name: metamorphosis
is_a: UBERON:0000105 ! life cycle stage
relationship: RO:0002087 AMPHX:0000014 ! immediately preceded by larval development
[Term]
id: AMPHX:0000017
name: juvenile
is_a: UBERON:0000105 ! life cycle stage
relationship: RO:0002087 AMPHX:0000016 ! immediately preceded by metamorphosis
[Term]
id: AMPHX:0000018
name: juvenile period
xref: UBERON:0034919
relationship: BFO:0000050 AMPHX:0000017 ! part of juvenile
relationship: RO:0002087 AMPHX:0000015 ! immediately preceded by larva period
[Term]
id: AMPHX:0000019
name: adult
is_a: UBERON:0000105 ! life cycle stage
relationship: RO:0002087 AMPHX:0000017 ! immediately preceded by juvenile
[Term]
id: AMPHX:0000020
name: adult period
xref: UBERON:0000113
relationship: BFO:0000050 AMPHX:0000019 ! part of adult
relationship: RO:0002087 AMPHX:0000018 ! immediately preceded by juvenile period
[Term]
id: AMPHX:0000022
name: 1-cell stage
def: "fertilized egg: time since fertilization is 0min, corresponding to 0.00% of development" []
relationship: BFO:0000050 AMPHX:0000008 ! part of zygote period
relationship: RO:0002087 AMPHX:0000005 ! immediately preceded by unfertilized egg stage
[Term]
id: AMPHX:0000023
name: 2-cell stage
xref: UBERON:0007232
relationship: BFO:0000050 AMPHX:0000009 ! part of cleavage period
relationship: RO:0002087 AMPHX:0000022 ! immediately preceded by 1-cell stage
property_value: IAO:0000301 "Hirakow and Kajita 1990" xsd:string
[Term]
id: AMPHX:0000024
name: 4-cell stage
xref: UBERON:0007233
relationship: BFO:0000050 AMPHX:0000009 ! part of cleavage period
relationship: RO:0002087 AMPHX:0000023 ! immediately preceded by 2-cell stage
property_value: IAO:0000301 "Hirakow and Kajita 1990" xsd:string
[Term]
id: AMPHX:0000025
name: 8-cell stage
xref: UBERON:0007236
relationship: BFO:0000050 AMPHX:0000009 ! part of cleavage period
relationship: RO:0002087 AMPHX:0000024 ! immediately preceded by 4-cell stage
property_value: IAO:0000301 "Hirakow and Kajita 1990" xsd:string
[Term]
id: AMPHX:0000026
name: 16-cell stage
relationship: BFO:0000050 AMPHX:0000009 ! part of cleavage period
relationship: RO:0002087 AMPHX:0000025 ! immediately preceded by 8-cell stage
property_value: IAO:0000301 "Hirakow and Kajita 1990" xsd:string
[Term]
id: AMPHX:0000027
name: 32-cell stage
relationship: BFO:0000050 AMPHX:0000009 ! part of cleavage period
relationship: RO:0002087 AMPHX:0000026 ! immediately preceded by 16-cell stage
property_value: IAO:0000301 "Hirakow and Kajita 1990" xsd:string
[Term]
id: AMPHX:0000028
name: 64-cell stage
relationship: BFO:0000050 AMPHX:0000009 ! part of cleavage period
relationship: RO:0002087 AMPHX:0000027 ! immediately preceded by 32-cell stage
property_value: IAO:0000301 "Hirakow and Kajita 1990" xsd:string
[Term]
id: AMPHX:0000029
name: 128-cell stage
relationship: BFO:0000050 AMPHX:0000009 ! part of cleavage period
relationship: RO:0002087 AMPHX:0000028 ! immediately preceded by 64-cell stage
property_value: IAO:0000301 "Hirakow and Kajita 1990" xsd:string
[Term]
id: AMPHX:0000030
name: 256-cell stage
[Term]
id: AMPHX:0000031
name: blastula stage
def: "initiation of asynchronous cell division" []
xref: UBERON:0000108
relationship: BFO:0000050 AMPHX:0000010 ! part of blastula period
relationship: RO:0002087 AMPHX:0000029 ! immediately preceded by 128-cell stage
property_value: IAO:0000301 "Hirakow and Kajita 1990" xsd:string
[Term]
id: AMPHX:0000032
name: gastrula-G0 stage
def: "initial flattening of the vegetal zone" []
relationship: BFO:0000050 AMPHX:0000011 ! part of gastrula period
relationship: RO:0002087 AMPHX:0000031 ! immediately preceded by blastula stage
[Term]
id: AMPHX:0000033
name: gastrula-G1 stage
def: "flattened vegetal pole" []
synonym: "very early gastrula" EXACT []
relationship: BFO:0000050 AMPHX:0000011 ! part of gastrula period
relationship: RO:0002087 AMPHX:0000032 ! immediately preceded by gastrula-G0 stage
property_value: IAO:0000301 "Hirakow and Kajita 1991" xsd:string
[Term]
id: AMPHX:0000034
name: gastrula-G2 stage
def: "invaginated vegetal pole, mesendoderm does not touch ectoderm" []
synonym: "very early gastrula" EXACT []
relationship: BFO:0000050 AMPHX:0000011 ! part of gastrula period
relationship: RO:0002087 AMPHX:0000033 ! immediately preceded by gastrula-G1 stage
property_value: IAO:0000301 "Hirakow and Kajita 1991" xsd:string
[Term]
id: AMPHX:0000035
name: gastrula-G3 stage
def: "cap shaped, mesendoderm touches ectoderm" []
synonym: "early gastrula" EXACT []
relationship: BFO:0000050 AMPHX:0000011 ! part of gastrula period
relationship: RO:0002087 AMPHX:0000034 ! immediately preceded by gastrula-G2 stage
property_value: IAO:0000301 "Hirakow and Kajita 1991" xsd:string
[Term]
id: AMPHX:0000036
name: gastrula-G4 stage
def: "cup shaped" []
synonym: "mid-gastrula" EXACT []
relationship: BFO:0000050 AMPHX:0000011 ! part of gastrula period
relationship: RO:0002087 AMPHX:0000035 ! immediately preceded by gastrula-G3 stage
property_value: IAO:0000301 "Hirakow and Kajita 1991" xsd:string
[Term]
id: AMPHX:0000037
name: gastrula-G5 stage
def: "vase shaped, due to body elongation during blastopore closure" []
synonym: "late gastrula" EXACT []
relationship: BFO:0000050 AMPHX:0000011 ! part of gastrula period
relationship: RO:0002087 AMPHX:0000036 ! immediately preceded by gastrula-G4 stage
property_value: IAO:0000301 "Hirakow and Kajita 1991" xsd:string
[Term]
id: AMPHX:0000038
name: gastrula-G6 stage
def: "bottle shaped, flattening neuroectoderm" []
synonym: "very late gastrula" EXACT []
relationship: BFO:0000050 AMPHX:0000011 ! part of gastrula period
relationship: RO:0002087 AMPHX:0000037 ! immediately preceded by gastrula-G5 stage
property_value: IAO:0000301 "Hirakow and Kajita 1991" xsd:string
[Term]
id: AMPHX:0000039
name: gastrula G7 stage
[Term]
id: AMPHX:0000040
name: neurula-N0 stage
def: "neural plate, just before blastopore closure" []
synonym: "very early neurula" EXACT []
relationship: BFO:0000050 AMPHX:0000012 ! part of neurula period
relationship: RO:0002087 AMPHX:0000038 ! immediately preceded by gastrula-G6 stage
[Term]
id: AMPHX:0000041
name: neurula-N1 stage
def: "1-3 somite pairs" []
synonym: "very early neurula" EXACT []
relationship: BFO:0000050 AMPHX:0000012 ! part of neurula period
relationship: RO:0002087 AMPHX:0000040 ! immediately preceded by neurula-N0 stage
property_value: IAO:0000301 "Hirakow and Kajita 1994" xsd:string
[Term]
id: AMPHX:0000042
name: neurula-N2 stage
def: "4-5 somite pairs, hatching" []
synonym: "early neurula" EXACT []
relationship: BFO:0000050 AMPHX:0000012 ! part of neurula period
relationship: RO:0002087 AMPHX:0000041 ! immediately preceded by neurula-N1 stage
[Term]
id: AMPHX:0000043
name: neurula-N3 stage
def: "6-7 somite pairs" []
synonym: "mid-neurula" EXACT []
relationship: BFO:0000050 AMPHX:0000012 ! part of neurula period
relationship: RO:0002087 AMPHX:0000042 ! immediately preceded by neurula-N2 stage
property_value: IAO:0000301 "Hirakow and Kajita 1994" xsd:string
[Term]
id: AMPHX:0000044
name: neurula-N4 stage
def: "8-9 somite pairs, prior to schizocoelic somite formation" []
synonym: "late neurula" EXACT []
relationship: BFO:0000050 AMPHX:0000012 ! part of neurula period
relationship: RO:0002087 AMPHX:0000043 ! immediately preceded by neurula-N3 stage
[Term]
id: AMPHX:0000045
name: tailbud-T0 stage
def: "12 somite pairs, tailbud shape, enlarged pharyngeal region" []
synonym: "early premouth" EXACT []
relationship: BFO:0000050 AMPHX:0000013 ! part of tailbud period
relationship: RO:0002087 AMPHX:0000044 ! immediately preceded by neurula-N4 stage
[Term]
id: AMPHX:0000046
name: tailbud-T1 stage
def: "13 somite pairs, mouth and pre-oral pit anlagen, first pigment spot" []
synonym: "late premouth" EXACT []
relationship: BFO:0000050 AMPHX:0000013 ! part of tailbud period
relationship: RO:0002087 AMPHX:0000045 ! immediately preceded by tailbud-T0 stage
[Term]
id: AMPHX:0000047
name: larva-L0 stage
def: "open mouth, no open gill slits" []
synonym: "early larva" EXACT []
relationship: BFO:0000050 AMPHX:0000015 ! part of larva period
relationship: RO:0002087 AMPHX:0000046 ! immediately preceded by tailbud-T1 stage
[Term]
id: AMPHX:0000048
name: larva-L1 stage
def: "open mouth, 1 open gill slit" []
synonym: "1-gill slit larva" EXACT []
relationship: BFO:0000050 AMPHX:0000015 ! part of larva period
relationship: RO:0002087 AMPHX:0000047 ! immediately preceded by larva-L0 stage
property_value: IAO:0000301 "Hirakow and Kajita 1994" xsd:string
[Term]
id: AMPHX:0000049
name: larva-L2 stage
def: "open mouth, 2 open gill slits" []
synonym: "2-gill slit larva" EXACT []
relationship: BFO:0000050 AMPHX:0000015 ! part of larva period
relationship: RO:0002087 AMPHX:0000048 ! immediately preceded by larva-L1 stage
property_value: IAO:0000301 "Hirakow and Kajita 1994" xsd:string
[Term]
id: AMPHX:0000050
name: larva-L3 stage
def: "open mouth, 3 open gill slits" []
synonym: "3-gill slit larva" EXACT []
relationship: BFO:0000050 AMPHX:0000015 ! part of larva period
relationship: RO:0002087 AMPHX:0000049 ! immediately preceded by larva-L2 stage
[Term]
id: AMPHX:0000051
name: larva-L4 stage
def: "open mouth, 4-13 gill slits" []
synonym: "late larva" EXACT []
relationship: BFO:0000050 AMPHX:0000015 ! part of larva period
relationship: RO:0002087 AMPHX:0000050 ! immediately preceded by larva-L3 stage
[Term]
id: AMPHX:0000052
name: larva-PL stage
def: "open mouth, 14-15 gill slits " []
synonym: "pre-metamorphic larva" EXACT []
relationship: BFO:0000050 AMPHX:0000015 ! part of larva period
relationship: RO:0002087 AMPHX:0000051 ! immediately preceded by larva-L4 stage
[Term]
id: AMPHX:0000053
name: larva-EML stage
def: "metapleural folds start to grow" []
synonym: "early metamorphic larva" EXACT []
relationship: BFO:0000050 AMPHX:0000016 ! part of metamorphosis
relationship: RO:0002087 AMPHX:0000052 ! immediately preceded by larva-PL stage
[Term]
id: AMPHX:0000054
name: larva-MML stage
def: "gill slit row starts to duplicate, hepatic caecum starts to develop" []
synonym: "mid-metamorphic larva" EXACT []
relationship: BFO:0000050 AMPHX:0000016 ! part of metamorphosis
relationship: RO:0002087 AMPHX:0000053 ! immediately preceded by larva-EML stage
[Term]
id: AMPHX:0000055
name: larva-LML stage
def: "mouth migration to frontal position" []
synonym: "late metamorphic larva" EXACT []
relationship: BFO:0000050 AMPHX:0000016 ! part of metamorphosis
relationship: RO:0002087 AMPHX:0000054 ! immediately preceded by larva-MML stage
[Term]
id: AMPHX:0000056
name: juvenile-J stage
def: "adult-like morphology, length of less than 3cm" []
synonym: "post-metamorphic juvenile" EXACT []
relationship: BFO:0000050 AMPHX:0000018 ! part of juvenile period
relationship: RO:0002087 AMPHX:0000055 ! immediately preceded by larva-LML stage
[Term]
id: AMPHX:0000057
name: adult-A stage
def: "adult-like morphology, length of more than 3cm" []
synonym: "adult" EXACT []
relationship: BFO:0000050 AMPHX:0000020 ! part of adult period
relationship: RO:0002087 AMPHX:0000056 ! immediately preceded by juvenile-J stage
[Term]
id: AMPHX:0000058
name: neurula-N5 stage
def: "10-11 somite pairs" []
synonym: "very late neurula" EXACT []
relationship: BFO:0000050 AMPHX:0000012 ! part of neurula period
relationship: RO:0002087 AMPHX:0000044 ! immediately preceded by neurula-N4 stage
property_value: IAO:0000301 "Hirakow and Kajita 1994" xsd:string
[Term]
id: AMPHX:1000001
name: whole organism
is_a: UBERON:0000061 ! anatomical structure
relationship: RO:0002488 AMPHX:0000008 ! existence starts during zygote period
relationship: RO:0002492 AMPHX:0000057 ! existence ends during adult-A stage
[Term]
id: AMPHX:1000002
name: blastomere
xref: NCIT:C12518
is_a: CL:0000000 ! cell
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
[Term]
id: AMPHX:1000003
name: whole oocyte
xref: NCIT:C12598
is_a: CL:0000000 ! cell
[Term]
id: AMPHX:1000004
name: tissue
xref: NCIT:C12801
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
[Term]
id: AMPHX:1000005
name: embryonic territory
xref: NCIT:C34144
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
[Term]
id: AMPHX:1000006
name: central nervous system
xref: NCIT:C12438
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
[Term]
id: AMPHX:1000007
name: vegetal pole cytoplasm
is_a: GO:0005575 ! cellular component
relationship: RO:0002488 AMPHX:0000005 ! existence starts during unfertilized egg stage
relationship: RO:0002492 AMPHX:0000022 ! existence ends during 1-cell stage
[Term]
id: AMPHX:1000008
name: vegetal pole cytoplasm of oocyte
is_a: AMPHX:1000007 ! vegetal pole cytoplasm
relationship: BFO:0000050 AMPHX:1000003 ! part of whole oocyte
[Term]
id: AMPHX:1000009
name: vegetal pole cytoplasm of embryo
is_a: AMPHX:1000007 ! vegetal pole cytoplasm
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
[Term]
id: AMPHX:1000010
name: animal pole cytoplasm
is_a: GO:0005575 ! cellular component
relationship: RO:0002488 AMPHX:0000005 ! existence starts during unfertilized egg stage
relationship: RO:0002492 AMPHX:0000022 ! existence ends during 1-cell stage
[Term]
id: AMPHX:1000011
name: animal pole cytoplasm of oocyte
is_a: AMPHX:1000010 ! animal pole cytoplasm
relationship: BFO:0000050 AMPHX:1000003 ! part of whole oocyte
[Term]
id: AMPHX:1000012
name: animal pole cytoplasm of embryo
is_a: AMPHX:1000010 ! animal pole cytoplasm
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
[Term]
id: AMPHX:1000013
name: zygote
def: "diploid cell produced by fusion of sperm cell nucleus and egg cell" []
xref: CL:0000365
xref: SPD:0000786
is_a: CL:0000000 ! cell
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
relationship: RO:0002488 AMPHX:0000022 ! existence starts during 1-cell stage
relationship: RO:0002492 AMPHX:0000022 ! existence ends during 1-cell stage
[Term]
id: AMPHX:1000014
name: 2-cell stage embryo
xref: UBERON:0007232
is_a: AMPHX:1000001 ! whole organism
relationship: RO:0002488 AMPHX:0000023 ! existence starts during 2-cell stage
relationship: RO:0002492 AMPHX:0000023 ! existence ends during 2-cell stage
[Term]
id: AMPHX:1000015
name: 4-cell stage embryo
xref: UBERON:0007233
is_a: AMPHX:1000001 ! whole organism
relationship: RO:0002488 AMPHX:0000024 ! existence starts during 4-cell stage
relationship: RO:0002492 AMPHX:0000024 ! existence ends during 4-cell stage
[Term]
id: AMPHX:1000016
name: blastomere of 2-cell stage embryo
def: "cell of the embryo, before the formation of germ layers is complete" []
xref: CL:0000007
is_a: AMPHX:1000002 ! blastomere
relationship: RO:0002202 AMPHX:1000013 ! develops from zygote
relationship: RO:0002488 AMPHX:0000023 ! existence starts during 2-cell stage
relationship: RO:0002492 AMPHX:0000023 ! existence ends during 2-cell stage
[Term]
id: AMPHX:1000017
name: blastomere of 4-cells stage embryo
def: "cell of the embryo, before the formation of germ layers is complete" []
xref: CL:0000007
is_a: AMPHX:1000002 ! blastomere
relationship: RO:0002202 AMPHX:1000014 ! develops from 2-cell stage embryo
relationship: RO:0002488 AMPHX:0000024 ! existence starts during 4-cell stage
relationship: RO:0002492 AMPHX:0000024 ! existence ends during 4-cell stage
[Term]
id: AMPHX:1000018
name: micromere
def: "cell located at the animal pole of the embryo, of small size" []
is_a: AMPHX:1000002 ! blastomere
relationship: RO:0002202 AMPHX:1000015 ! develops from 4-cell stage embryo
relationship: RO:0002488 AMPHX:0000025 ! existence starts during 8-cell stage
relationship: RO:0002492 AMPHX:0000025 ! existence ends during 8-cell stage
[Term]
id: AMPHX:1000019
name: macromere
def: "cell located at the vegetal pole of the embryo, of big size" []
is_a: AMPHX:1000002 ! blastomere
relationship: RO:0002202 AMPHX:1000015 ! develops from 4-cell stage embryo
relationship: RO:0002488 AMPHX:0000025 ! existence starts during 8-cell stage
relationship: RO:0002492 AMPHX:0000025 ! existence ends during 8-cell stage
[Term]
id: AMPHX:1000020
name: animal blastomere
def: "cell located at the animal pole of the embryo, before gastrulation starts" []
is_a: AMPHX:1000002 ! blastomere
relationship: RO:0002202 AMPHX:1000018 ! develops from micromere
relationship: RO:0002488 AMPHX:0000026 ! existence starts during 16-cell stage
relationship: RO:0002492 AMPHX:0000031 ! existence ends during blastula stage
[Term]
id: AMPHX:1000021
name: vegetal blastomere
def: "cell located at the vegetal pole of the embryo, before gastrulation starts" []
is_a: AMPHX:1000002 ! blastomere
relationship: RO:0002202 AMPHX:1000019 ! develops from macromere
relationship: RO:0002488 AMPHX:0000026 ! existence starts during 16-cell stage
relationship: RO:0002492 AMPHX:0000031 ! existence ends during blastula stage
[Term]
id: AMPHX:1000022
name: presumptive ectoderm
xref: UBERON:0006601
is_a: AMPHX:1000005 ! embryonic territory
relationship: RO:0002202 AMPHX:1000020 ! develops from animal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000034 ! existence ends during gastrula-G2 stage
[Term]
id: AMPHX:1000023
name: dorsal presumptive ectoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000022 ! part of presumptive ectoderm
relationship: RO:0002202 AMPHX:1000020 ! develops from animal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000034 ! existence ends during gastrula-G2 stage
[Term]
id: AMPHX:1000024
name: ventral presumptive ectoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000022 ! part of presumptive ectoderm
relationship: RO:0002202 AMPHX:1000020 ! develops from animal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000034 ! existence ends during gastrula-G2 stage
[Term]
id: AMPHX:1000025
name: presumptive mesendoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: RO:0002202 AMPHX:1000021 ! develops from vegetal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000034 ! existence ends during gastrula-G2 stage
[Term]
id: AMPHX:1000026
name: dorsal presumptive mesendoderm
xref: UBERON:0006603
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000025 ! part of presumptive mesendoderm
relationship: RO:0002202 AMPHX:1000021 ! develops from vegetal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000034 ! existence ends during gastrula-G2 stage
[Term]
id: AMPHX:1000027
name: ventral presumptive mesendoderm
xref: UBERON:0006595
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000025 ! part of presumptive mesendoderm
relationship: RO:0002202 AMPHX:1000021 ! develops from vegetal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000034 ! existence ends during gastrula-G2 stage
[Term]
id: AMPHX:1000028
name: blastopore lip
xref: UBERON:3010455
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
relationship: RO:0002202 AMPHX:1000021 ! develops from vegetal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000029
name: dorsal blastopore lip
xref: UBERON:3010457
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000028 ! part of blastopore lip
relationship: RO:0002202 AMPHX:1000021 ! develops from vegetal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000030
name: ventral blastopore lip
xref: UBERON:3010456
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000028 ! part of blastopore lip
relationship: RO:0002202 AMPHX:1000021 ! develops from vegetal blastomere
relationship: RO:0002488 AMPHX:0000032 ! existence starts during gastrula-G0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000031
name: ectoderm
xref: UBERON:0000924
is_a: AMPHX:1000005 ! embryonic territory
relationship: RO:0002202 AMPHX:1000022 ! develops from presumptive ectoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000032
name: dorsal ectoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000031 ! part of ectoderm
relationship: RO:0002202 AMPHX:1000023 ! develops from dorsal presumptive ectoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000035 ! existence ends during gastrula-G3 stage
[Term]
id: AMPHX:1000033
name: ventral ectoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000031 ! part of ectoderm
relationship: RO:0002202 AMPHX:1000024 ! develops from ventral presumptive ectoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000035 ! existence ends during gastrula-G3 stage
[Term]
id: AMPHX:1000034
name: anterior ectoderm
xref: UBERON:6000119
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000031 ! part of ectoderm
relationship: RO:0002202 AMPHX:1000022 ! develops from presumptive ectoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000035 ! existence ends during gastrula-G3 stage
[Term]
id: AMPHX:1000035
name: posterior ectoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000031 ! part of ectoderm
relationship: RO:0002202 AMPHX:1000022 ! develops from presumptive ectoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000035 ! existence ends during gastrula-G3 stage
[Term]
id: AMPHX:1000036
name: mesendoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: RO:0002202 AMPHX:1000025 ! develops from presumptive mesendoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000037
name: dorsal mesendoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000036 ! part of mesendoderm
relationship: RO:0002202 AMPHX:1000026 ! develops from dorsal presumptive mesendoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000038
name: ventral mesendoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000036 ! part of mesendoderm
relationship: RO:0002202 AMPHX:1000027 ! develops from ventral presumptive mesendoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000039
name: anterior mesendoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000036 ! part of mesendoderm
relationship: RO:0002202 AMPHX:1000025 ! develops from presumptive mesendoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000040
name: posterior mesendoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000036 ! part of mesendoderm
relationship: RO:0002202 AMPHX:1000025 ! develops from presumptive mesendoderm
relationship: RO:0002488 AMPHX:0000035 ! existence starts during gastrula-G3 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000041
name: presumptive neural plate
xref: UBERON:0007284
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000032 ! part of dorsal ectoderm
relationship: RO:0002202 AMPHX:1000032 ! develops from dorsal ectoderm
relationship: RO:0002488 AMPHX:0000036 ! existence starts during gastrula-G4 stage
relationship: RO:0002492 AMPHX:0000038 ! existence ends during gastrula-G6 stage
[Term]
id: AMPHX:1000042
name: presumptive border of the neural plate
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000032 ! part of dorsal ectoderm
relationship: RO:0002202 AMPHX:1000032 ! develops from dorsal ectoderm
relationship: RO:0002488 AMPHX:0000036 ! existence starts during gastrula-G4 stage
relationship: RO:0002492 AMPHX:0000038 ! existence ends during gastrula-G6 stage
[Term]
id: AMPHX:1000043
name: presumptive anterior neural plate
xref: UBERON:2007014
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000032 ! part of dorsal ectoderm
relationship: RO:0002202 AMPHX:1000032 ! develops from dorsal ectoderm
relationship: RO:0002488 AMPHX:0000036 ! existence starts during gastrula-G4 stage
relationship: RO:0002492 AMPHX:0000038 ! existence ends during gastrula-G6 stage
[Term]
id: AMPHX:1000044
name: presumptive epidermis
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000031 ! part of ectoderm
relationship: RO:0002202 AMPHX:1000033 ! develops from ventral ectoderm
relationship: RO:0002488 AMPHX:0000036 ! existence starts during gastrula-G4 stage
relationship: RO:0002492 AMPHX:0000038 ! existence ends during gastrula-G6 stage
[Term]
id: AMPHX:1000045
name: presumptive anterior epidermis
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000044 ! part of presumptive epidermis
relationship: RO:0002202 AMPHX:1000034 ! develops from anterior ectoderm
relationship: RO:0002488 AMPHX:0000036 ! existence starts during gastrula-G4 stage
relationship: RO:0002492 AMPHX:0000038 ! existence ends during gastrula-G6 stage
[Term]
id: AMPHX:1000046
name: dorsal axial mesendoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000037 ! part of dorsal mesendoderm
relationship: RO:0002202 AMPHX:1000037 ! develops from dorsal mesendoderm
relationship: RO:0002488 AMPHX:0000036 ! existence starts during gastrula-G4 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000047
name: dorsal paraxial mesendoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000037 ! part of dorsal mesendoderm
relationship: RO:0002202 AMPHX:1000037 ! develops from dorsal mesendoderm
relationship: RO:0002488 AMPHX:0000036 ! existence starts during gastrula-G4 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000048
name: neural plate
xref: UBERON:0003075
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000001 ! part of whole organism
relationship: RO:0002202 AMPHX:1000041 ! develops from presumptive neural plate
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000041 ! existence ends during neurula-N1 stage
[Term]
id: AMPHX:1000049
name: border of the neural plate
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000048 ! part of neural plate
relationship: RO:0002202 AMPHX:1000042 ! develops from presumptive border of the neural plate
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000041 ! existence ends during neurula-N1 stage
[Term]
id: AMPHX:1000050
name: anterior neural plate
is_a: UBERON:0000061 ! anatomical structure
relationship: BFO:0000050 AMPHX:1000048 ! part of neural plate
relationship: RO:0002202 AMPHX:1000043 ! develops from presumptive anterior neural plate
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000051
name: epidermis
xref: UBERON:0007376
is_a: AMPHX:1000004 ! tissue
relationship: RO:0002202 AMPHX:1000044 ! develops from presumptive epidermis
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000057 ! existence ends during adult-A stage
[Term]
id: AMPHX:1000052
name: anterior epidermis
is_a: AMPHX:1000004 ! tissue
relationship: BFO:0000050 AMPHX:1000051 ! part of epidermis
relationship: RO:0002202 AMPHX:1000045 ! develops from presumptive anterior epidermis
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000057 ! existence ends during adult-A stage
[Term]
id: AMPHX:1000053
name: ventral epidermis
is_a: AMPHX:1000004 ! tissue
relationship: BFO:0000050 AMPHX:1000051 ! part of epidermis
relationship: RO:0002202 AMPHX:1000051 ! develops from epidermis
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000057 ! existence ends during adult-A stage
[Term]
id: AMPHX:1000054
name: mesoderm
xref: UBERON:0000926
is_a: AMPHX:1000005 ! embryonic territory
relationship: RO:0002202 AMPHX:1000037 ! develops from dorsal mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000058 ! existence ends during neurula-N5 stage
[Term]
id: AMPHX:1000055
name: presumptive notochord
xref: UBERON:0004880
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000054 ! part of mesoderm
relationship: RO:0002202 AMPHX:1000046 ! develops from dorsal axial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000056
name: presumptive somite pair 1
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000065 ! part of paraxial mesoderm
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000057
name: presumptive somite pair 2
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000065 ! part of paraxial mesoderm
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000058
name: presumptive somite pair 3
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000065 ! part of paraxial mesoderm
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000059
name: presumptive left somite 1
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000056 ! part of presumptive somite pair 1
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000060
name: presumptive right somite 1
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000056 ! part of presumptive somite pair 1
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000061
name: presumptive left somite 2
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000057 ! part of presumptive somite pair 2
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000062
name: presumptive right somite 2
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000057 ! part of presumptive somite pair 2
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000063
name: presumptive left somite 3
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000058 ! part of presumptive somite pair 3
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000064
name: presumptive right somite 3
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000058 ! part of presumptive somite pair 3
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000040 ! existence ends during neurula-N0 stage
[Term]
id: AMPHX:1000065
name: paraxial mesoderm
xref: UBERON:0003077
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000054 ! part of mesoderm
relationship: RO:0002202 AMPHX:1000047 ! develops from dorsal paraxial mesendoderm
relationship: RO:0002488 AMPHX:0000040 ! existence starts during neurula-N0 stage
relationship: RO:0002492 AMPHX:0000058 ! existence ends during neurula-N5 stage
[Term]
id: AMPHX:1000066
name: left mesoderm
is_a: AMPHX:1000005 ! embryonic territory
relationship: BFO:0000050 AMPHX:1000054 ! part of mesoderm
relationship: RO:0002202 AMPHX:1000036 ! develops from mesendoderm