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[7e/d74203] NOTE: Process `WGBS:erne_bs5 (SRR5526174)` terminated with an error exit status (127) -- Execution is retried (1)
[47/8108ab] NOTE: Process `WGBS:erne_bs5 (SRR5526206)` terminated with an error exit status (127) -- Execution is retried (1)
[bf/47a72f] NOTE: Process `WGBS:erne_bs5 (SRR5526209)` terminated with an error exit status (127) -- Execution is retried (1)
[61/698ace] NOTE: Process `WGBS:erne_bs5 (SRR5526172)` terminated with an error exit status (127) -- Execution is retried (1)
ERROR ~ Error executing process >'WGBS:erne_bs5 (SRR5526174)'
Caused by:
Process `WGBS:erne_bs5 (SRR5526174)` terminated with an error exit status (127)
Command executed:
executor >local (6)
[- ] process > WGBS:read_trimming -
[- ] process > WGBS:fastqc -
[d8/5d76f5] process > WGBS:erne_bs5 (SRR5526206) [ 75%] 6 of 8, failed: 6, retries: 4
[- ] process > WGBS:segemehl -
[- ] process > WGBS:erne_bs5_processing -
[- ] process > WGBS:segemehl_processing -
[- ] process > WGBS:bam_merging -
[- ] process > WGBS:bam_subsetting -
[- ] process > WGBS:bam_filtering -
[- ] process > WGBS:bam_statistics -
[- ] process > CALL:bam_processing -
[- ] process > CALL:Picard_MarkDuplicates -
[- ] process > CALL:MethylDackel -
[- ] process > CALL:conversion_rate_estimation -
Execution cancelled -- Finishing pending tasks before exit
Oops... Pipeline execution stopped with the following message: null
Pipeline execution summary
---------------------------
Name : maniac_tesla
Profile : conda
Launch dir :<path>
Work dir :<path>
Status : failed
Error report : Error executing process >'WGBS:erne_bs5 (SRR5526174)'
Caused by:
Process `WGBS:erne_bs5 (SRR5526174)` terminated with an error exit status (127)
Hi Tomas, sorry you're having problems. Unfortunately there's not enough information here yet for me to be able to help you. First, did you try running the "Test data" example from the README? If this works correctly, then we know there is not a problem with the pipeline setup and configuration on your system. Then, please let me know how you are running the command on your own data and what files are present in the input directory. After that we can take a look at some further logging from the .nextflow.log file to see what's going on.
Hi, please I need help with this issue:
Traced info:
The text was updated successfully, but these errors were encountered: