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Peaksearching... #18

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jonwright opened this issue Mar 1, 2018 · 3 comments
Closed

Peaksearching... #18

jonwright opened this issue Mar 1, 2018 · 3 comments

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@jonwright
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Output peaks into a hdf file directly and make ascii files optional
Include basic filtering during peaksearch (npixels > x)
Separate the thresholding, labelling, properties from each other so you can do:
smoothing filter -> labels
original data + labels -> centre of mass

@jonwright
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Add an in memory option to get the peaks back without doing I/O and use this for index_unknown/fft_index_refac

@jonwright
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Allow use of local max label and sparse algorithms.

Sort out the 2D versus 3D/4D/... question.

1 frame ->1 list of blobs

Each blob has neighbors on each dimension:

  • dim0 = same frame = peaks are connected / overlaps
  • dim1 = omega/y/whatever.

Depends a lot on the project files stuff too #27

@jonwright
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Mostly done now in ImageD11/sinograms/lima_segmenter and friends. Documentation is lacking

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