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R-CMD-check.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master, version_0_3_3_dev]
pull_request:
branches: [main, master, version_0_3_3_dev]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel'}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: r-reticulate
auto-update-conda: true
python-version: 3.9
channels: conda-forge
allow-softlinks: true
channel-priority: flexible
show-channel-urls: true
use-only-tar-bz2: true
- name: setup r-reticulate conda
shell: Rscript {0}
run: |
library(reticulate)
python_packages<-c("transformers",
"tokenizers",
"datasets",
"codecarbon")
envname<-"r-reticulate"
conda_install(
packages = c(
"tensorflow<=2.14"
),
envname = envname,
conda = "auto",
pip = TRUE
)
conda_install(
packages = c(
"torch",
"torcheval",
"safetensors",
"accelerate"),
envname = envname,
conda = "auto",
pip = TRUE
)
conda_install(
packages = python_packages,
envname = envname,
conda = "auto",
pip = TRUE
)
path_to_python <- conda_python("r-reticulate")
writeLines(sprintf("RETICULATE_PYTHON=%s", path_to_python),
Sys.getenv("GITHUB_ENV"))
- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: false