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Ubuntu.yml
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name: Ubuntu
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
workflow_dispatch:
jobs:
Ubuntu-coverage:
runs-on: ubuntu-20.04
env:
FC: gfortran
PFUNIT_DIR: /home/runner/work/GORILLA/GORILLA/pFUnit/build/installed/PFUNIT-4.7/
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Dependencies
run: |
sudo apt-get update
sudo apt-get install wget unzip gfortran liblapack-dev libnetcdff-dev
sudo apt install lcov
- name: Install pFUnit
run: |
git clone https://github.com/Goddard-Fortran-Ecosystem/pFUnit
cd pFUnit
mkdir -p build
cd build
cmake ..
make -j$(nproc)
make tests
make install
- name: Additional Files
run: |
cd $GITHUB_WORKSPACE
wget -O 954.zip "https://dl.acm.org/action/downloadSupplement?doi=10.1145%2F2699468&file=954.zip&download=true"
unzip 954.zip
cp 954/F90/Src/Polynomial234RootSolvers.f90 SRC/contrib/
- name: Build
run: |
./build_coverage.sh
- name: Archive code coverage results
uses: actions/upload-artifact@v3
with:
name: code-coverage-report
path: BUILD/COVERAGE/
Ubuntu:
runs-on: ubuntu-20.04
env:
FC: gfortran
PFUNIT_DIR: /home/runner/work/GORILLA/GORILLA/pFUnit/build/installed/PFUNIT-4.7
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Dependencies
run: |
sudo apt-get update
sudo apt-get install wget unzip gfortran liblapack-dev libnetcdff-dev
- name: Additional Files
run: |
cd $GITHUB_WORKSPACE
wget -O 954.zip "https://dl.acm.org/action/downloadSupplement?doi=10.1145%2F2699468&file=954.zip&download=true"
unzip 954.zip
cp 954/F90/Src/Polynomial234RootSolvers.f90 SRC/contrib/
- name: Build
run: |
./build.sh
- name: Run examples
run: |
cd EXAMPLES/example_1
./test_gorilla_main_cmake.x
cd ../../EXAMPLES/example_2
./test_gorilla_main_cmake.x
cd ../../EXAMPLES/example_3
./test_gorilla_main_cmake.x
cd ../../EXAMPLES/example_4
./test_gorilla_main_cmake.x
cd ../../EXAMPLES/example_5
./test_gorilla_main_cmake.x
cd ../../EXAMPLES/example_6
./test_gorilla_main_cmake.x
cd ../../EXAMPLES/example_7
./test_gorilla_main_cmake.x
- name: Set up MATLAB
uses: matlab-actions/setup-matlab@v1
- name: Run MATLAB scripts
uses: matlab-actions/run-command@v1
with:
command: |
cd MATLAB
example_1
example_2
example_3
example_4
example_5
example_6
example_7
example_8
- name: Run MATLAB livescript
uses: matlab-actions/run-command@v1
with:
command: |
cd MATLAB
plotting_tutorial
- name: Archive MATLAB results
uses: actions/upload-artifact@v3
with:
name: MATLAB-RESULTS
path: MATLAB/data_plots
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: 3.9
- name: Install PYTHON dependencies
run: |
python -m pip install --upgrade pip
pip install f90nml numpy matplotlib jupyter jupyterlab
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Run PYTHON scripts
run: |
cd PYTHON
python3.9 example_1.py
python3.9 example_2.py
python3.9 example_3.py
python3.9 example_4.py
python3.9 example_5.py
python3.9 example_6.py
python3.9 example_7.py
- name: Run PYTHON plottingscripts
run: |
cd PYTHON
python3.9 plot_example_1.py
python3.9 plot_example_2.py
python3.9 plot_example_3.py
python3.9 plot_example_4.py
python3.9 plot_example_5.py
python3.9 plot_example_6.py
python3.9 plot_example_7.py
- name: Run JUPYTER notebook
run: |
cd PYTHON
jupyter nbconvert --to script plotting_tutorial.ipynb
python3.9 plotting_tutorial.py
- name: Archive PYTHON results
uses: actions/upload-artifact@v3
with:
name: PYTHON-RESULTS
path: PYTHON/data_plots