kallisto-0.50.1-foss-2022b.eb

# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild

easyblock = 'CMakeMake'

name = 'kallisto'
version = '0.50.1'

homepage = 'https://pachterlab.github.io/kallisto/'
description = """kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally
 of target sequences using high-throughput sequencing reads."""

toolchain = {'name': 'foss', 'version': '2022b'}
toolchainopts = {'pic': True, 'usempi': True}

github_account = 'pachterlab'
source_urls = [GITHUB_SOURCE]
sources = ['v%(version)s.tar.gz']
checksums = ['030752bab3b0e33cd3f23f6d8feddd74194e5513532ffbf23519e84db2a86d34']

builddependencies = [
    ('Autotools', '20220317'),
    ('CMake', '3.24.3'),
]

dependencies = [('HDF5', '1.14.0')]

preconfigopts = "cd ../%(name)s-%(version)s/ext/htslib/ && autoreconf  --install && cd - &&"

parallel = 1

separate_build_dir = True

sanity_check_paths = {
    'files': ['bin/kallisto'],
    'dirs': [],
}

moduleclass = 'bio'