TopHat-2.1.2-foss-2016b.eb

# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# Swiss Institute of Bioinformatics
# Biozentrum - University of Basel

easyblock = 'ConfigureMake'

name = 'TopHat'
version = '2.1.2'

homepage = 'http://ccb.jhu.edu/software/%(namelower)s/'
description = """TopHat is a fast splice junction mapper for RNA-Seq reads."""

toolchain = {'name': 'foss', 'version': '2016b'}
toolchainopts = {'cstd': 'gnu++98', 'pic': True}

source_urls = ['http://github.com/infphilo/tophat/archive']
sources = ['v%(version)s.tar.gz']

patches = ['tophat-2.0.13-zlib.patch']

builddependencies = [('Autoconf', '2.69')]

dependencies = [
    ('Boost', '1.67.0'),
    ('zlib', '1.2.8'),
]

preconfigopts = './autogen.sh && '
configopts = '--with-boost=$EBROOTBOOST'

parallel = 1

sanity_check_paths = {
    'files': ['bin/tophat'],
    'dirs': [],
}

moduleclass = 'bio'