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replaceclass.py
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replaceclass.py
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import numpy as np
import pandas as pd
import os
import cfg
import argparse
CFG = cfg.CFG()
parser = argparse.ArgumentParser()
parser.add_argument('-f', type=str, help='the folder of files you want test.')
args = parser.parse_args()
OLDER_PATH = '/Users/freud/Documents/MANU/lstmsom_data/exp' + \
args.f + '/analysis_data_' + args.f + '/'
def ReplaceClass(datacsvname):
dataframe = pd.read_csv(OLDER_PATH + datacsvname, dtype={'class': str})
"""
dataframe['ICD_O3_pathology'] = dataframe['ICD_O3_pathology'].apply(
lambda x: x[:3]).tolist()
"""
classlist = list(set(dataframe['class']))
for c in classlist:
dataframe['class'][dataframe['class'] == c] = CFG.classreplace[c]
print(list(set(dataframe['ICD_O3_pathology'])))
dataframe.to_csv(OLDER_PATH + datacsvname, index=False)
if __name__ == '__main__':
filelist = os.listdir(OLDER_PATH)
for f in filelist:
if 'csv' in f:
print(f)
ReplaceClass(f)