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deconvolution_fit error and no piechart #10
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Hi Eva, The script provides stepwise analysis to process the toy data and obtains the results as shown in the vignette. In this script, you will find a proper list of colors for signature visualization (section 2). You have missed out naming the variables in the mycol list. |
Yup! Thanks for pointing out the R script; sorry I missed it. Thanks! |
Hi Palimpsest Dev Team,
I was going through the package's accompanying vignette http://nbviewer.jupyter.org/github/FunGeST/Palimpsest/blob/master/Files/vignette_palimpsest.pdf and came across an issue related to
deconvolution_fit
. At Section 5.3 of the vignette, I ran the following commands:mycol
so I defined it here (hoping I did the right thing).CHC205T_Signature_Contribution.pdf
Note that I installed Palimpsest (on my Mac) using
devtools::install_github("FunGeST/Palimpsest")
which did not include the test dataset, so I obtained it from here https://github.com/FunGeST/Palimpsest/tree/master/RUNNING_PALIMPSEST_EXAMPLE. Not sure if that makes a difference...?Thanks in advance for your help.
Eva.
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