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DESCRIPTION
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DESCRIPTION
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Type: Package
Package: genieBPC
Title: Project GENIE BioPharma Collaborative Data Processing Pipeline
Version: 2.0.0
Authors@R:
c(
person(given = "Jessica A.",
family = "Lavery",
role = c("aut", "cre"),
email = "laveryj@mskcc.org",
comment = c(ORCID = "0000-0002-2746-5647")),
person(given = "Michael A.",
family = "Curry",
role = "aut",
comment = c(ORCID = "0000-0002-0261-4044")),
person(given = "Samantha",
family = "Brown",
role = "aut",
comment = c(ORCID = "0000-0001-5352-974X")),
person(given = "Karissa",
family = "Whiting",
role = "aut",
comment = c(ORCID = "0000-0002-4683-1868")),
person(given = "Hannah",
family = "Fuchs",
role = "aut",
comment = c(ORCID = "0000-0003-2426-0096")),
person(given = "Axel",
family = "Martin",
role = "aut"),
person(given = "Daniel D.",
family = "Sjoberg",
role = c("ctb"),
email = "danield.sjoberg@gmail.com",
comment = c(ORCID = "0000-0003-0862-2018")))
Description: The American Association Research (AACR) Project
Genomics Evidence Neoplasia Information Exchange (GENIE) BioPharma
Collaborative represents a multi-year, multi-institution effort
to build a pan-cancer repository of linked clinico-genomic data.
The genomic and clinical data are provided in multiple releases (separate
releases for each cancer cohort with updates following data corrections),
which are stored on the data sharing platform
'Synapse' <https://www.synapse.org/>.
The 'genieBPC' package provides a seamless way to obtain the
data corresponding to each release from 'Synapse' and to prepare
datasets for analysis.
License: MIT + file LICENSE
BugReports: https://github.com/GENIE-BPC/genieBPC/issues
Depends:
R (>= 3.4)
Imports:
cli (>= 2.5.0),
dplyr (>= 1.0.6),
dtplyr (>= 1.1.0),
httr,
jsonlite,
purrr (>= 0.3.4),
rlang (>= 1.0.0),
stringr (>= 1.4.0),
sunburstR,
tibble (>= 3.1.2),
tidyr
Suggests:
covr (>= 3.5.1),
ggplot2 (>= 3.3.5),
gt (>= 0.3.0),
gtsummary (>= 1.5.2),
knitr (>= 1.33),
magrittr (>= 2.0.1),
plotly (>= 4.10.0),
rmarkdown (>= 2.8),
testthat (>= 3.0.0),
markdown,
spelling
VignetteBuilder:
knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: TRUE
RoxygenNote: 7.3.1
URL: https://genie-bpc.github.io/genieBPC/
Language: en-US