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modules.json
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modules.json
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{
"name": "nf-core/rnaseq",
"homePage": "https://github.com/nf-core/rnaseq",
"repos": {
"nf-core/modules": {
"bbmap/bbsplit": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"cat/fastq": {
"git_sha": "9aadd9a6d3f5964476582319b3a1c54a3e3fe7c9"
},
"custom/dumpsoftwareversions": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"custom/getchromsizes": {
"git_sha": "213403187932dbbdd936a04474cc8cd8abae7a08"
},
"fastqc": {
"git_sha": "49b18b1639f4f7104187058866a8fab33332bdfe"
},
"gffread": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"gunzip": {
"git_sha": "9aadd9a6d3f5964476582319b3a1c54a3e3fe7c9"
},
"hisat2/align": {
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"hisat2/build": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"hisat2/extractsplicesites": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"picard/markduplicates": {
"git_sha": "49b18b1639f4f7104187058866a8fab33332bdfe"
},
"preseq/lcextrap": {
"git_sha": "7111e571cc5b6069de4673cd6165af680f17b4d7"
},
"qualimap/rnaseq": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"rsem/calculateexpression": {
"git_sha": "1b5d3f5ac2ae61ee35dece20a2aeb8018b6438ce"
},
"rsem/preparereference": {
"git_sha": "1b5d3f5ac2ae61ee35dece20a2aeb8018b6438ce"
},
"rseqc/bamstat": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/inferexperiment": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/innerdistance": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/junctionannotation": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/junctionsaturation": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/readdistribution": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/readduplication": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"rseqc/tin": {
"git_sha": "4dbc166a7c30e963511fb5c9870fbcaa158a53a9"
},
"salmon/index": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"salmon/quant": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"samtools/flagstat": {
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"samtools/idxstats": {
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"samtools/index": {
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"samtools/sort": {
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"samtools/stats": {
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"sortmerna": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"star/align": {
"git_sha": "fb6c7bca3d55c19a793372513395e3a567bdd7ba"
},
"star/genomegenerate": {
"git_sha": "fb6c7bca3d55c19a793372513395e3a567bdd7ba"
},
"stringtie/stringtie": {
"git_sha": "6d88f2da8cc5d586456e801b535cc4213e0fa2f7"
},
"subread/featurecounts": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"trimgalore": {
"git_sha": "85ec13ff1fc2196c5a507ea497de468101baabed"
},
"ucsc/bedclip": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"ucsc/bedgraphtobigwig": {
"git_sha": "e20e57f90b6787ac9a010a980cf6ea98bd990046"
},
"umitools/dedup": {
"git_sha": "84f02a08a5d6d881cb18c31fb15faca4e735a1f2"
},
"umitools/extract": {
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"untar": {
"git_sha": "9aadd9a6d3f5964476582319b3a1c54a3e3fe7c9"
}
}
}
}