-
Notifications
You must be signed in to change notification settings - Fork 1
/
DESCRIPTION
41 lines (41 loc) · 1.71 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
Package: geneset
Type: Package
Title: Get Gene Sets for Gene Enrichment Analysis
Version: 0.2.8
Authors@R:
c(person(given = "Yunze",
family = "Liu",
role = c("aut", "cre"),
email = "jieandze1314@gmail.com",
comment = c(ORCID = "0000-0002-7414-8556")))
Maintainer: Yunze Liu <jieandze1314@gmail.com>
URL: https://github.com/GangLiLab/geneset
BugReports: https://github.com/GangLiLab/geneset/issues
Description: Gene sets are fundamental for gene enrichment analysis. The package 'geneset' enables querying
gene sets from public databases including 'GO' (Gene Ontology Consortium. (2004) <doi:10.1093/nar/gkh036>),
'KEGG' (Minoru et al. (2000) <doi:10.1093/nar/28.1.27>),
'WikiPathway' (Marvin et al. (2020) <doi:10.1093/nar/gkaa1024>),
'MsigDb' (Arthur et al. (2015) <doi:10.1016/j.cels.2015.12.004>),
'Reactome' (David et al. (2011) <doi:10.1093/nar/gkq1018>),
'MeSH' (Ish et al. (2014) <doi:10.4103/0019-5413.139827>),
'DisGeNET' (Janet et al. (2017) <doi:10.1093/nar/gkw943>),
'Disease Ontology' (Lynn et al. (2011) <doi:10.1093/nar/gkr972>),
'Network of Cancer Genes' (Dimitra et al. (2019) <doi:10.1186/s13059-018-1612-0>) and
'COVID-19' (Maxim et al. (2020) <doi:10.21203/rs.3.rs-28582/v1>).
Gene sets are stored in the list object which provides data frame of 'geneset' and 'geneset_name'.
The 'geneset' has two columns of term ID and gene ID. The 'geneset_name' has two columns of
terms ID and term description.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6)
Imports:
dplyr,
RCurl,
fst,
stringi,
stringr
RoxygenNote: 7.2.2
Suggests:
testthat (>= 3.0.0)
Config/testthat/edition: 3