/
hg19_gap.txt
498 lines (498 loc) · 25 KB
/
hg19_gap.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
bin chrom chromStart chromEnd ix n size type bridge
0 chr1 124535434 142535434 1271 N 18000000 heterochromatin no
23 chr1 121535434 124535434 1270 N 3000000 centromere no
76 chr1 3845268 3995268 47 N 150000 contig no
85 chr1 13219912 13319912 154 N 100000 contig no
89 chr1 17125658 17175658 196 N 50000 clone yes
101 chr1 29878082 30028082 337 N 150000 contig no
188 chr1 120697156 120747156 1263 N 50000 clone yes
188 chr1 120936695 121086695 1265 N 150000 contig no
188 chr1 121485434 121535434 1269 N 50000 clone no
209 chr1 142731022 142781022 1273 N 50000 clone yes
209 chr1 142967761 143117761 1275 N 150000 contig no
210 chr1 143771002 143871002 1281 N 100000 contig no
210 chr1 144401744 144451744 1289 N 50000 clone yes
212 chr1 146253299 146303299 1312 N 50000 clone yes
214 chr1 148026038 148176038 1328 N 150000 contig no
214 chr1 148361358 148511358 1331 N 150000 contig no
269 chr1 205922707 206072707 1875 N 150000 contig no
269 chr1 206332221 206482221 1878 N 150000 contig no
310 chr1 248908210 249058210 2293 N 150000 contig no
585 chr1 0 10000 1 N 10000 telomere no
586 chr1 177417 227417 4 N 50000 clone yes
587 chr1 267719 317719 6 N 50000 contig no
588 chr1 471368 521368 8 N 50000 contig no
605 chr1 2634220 2684220 32 N 50000 clone yes
684 chr1 13052998 13102998 151 N 50000 clone yes
688 chr1 13557162 13607162 157 N 50000 clone yes
1377 chr1 103863906 103913906 1088 N 50000 clone yes
1678 chr1 143292816 143342816 1277 N 50000 clone yes
1680 chr1 143544525 143644525 1279 N 100000 contig no
1684 chr1 144095783 144145783 1285 N 50000 contig no
1685 chr1 144224481 144274481 1287 N 50000 contig no
1688 chr1 144622413 144672413 1291 N 50000 contig no
1689 chr1 144710724 144810724 1293 N 100000 clone yes
1697 chr1 145833118 145883118 1307 N 50000 clone yes
1700 chr1 146164650 146214650 1310 N 50000 clone yes
1719 chr1 148684147 148734147 1333 N 50000 clone yes
1721 chr1 148954460 149004460 1337 N 50000 clone yes
1725 chr1 149459645 149509645 1342 N 50000 clone yes
2292 chr1 223747846 223797846 2038 N 50000 clone yes
2379 chr1 235192211 235242211 2159 N 50000 clone yes
2486 chr1 249240621 249250621 2302 N 10000 telomere no
19 chr2 90545103 91545103 762 N 1000000 heterochromatin no
20 chr2 92326171 95326171 770 N 3000000 centromere no
76 chr2 3529312 3579312 38 N 50000 contig no
77 chr2 5018788 5118788 52 N 100000 contig no
156 chr2 87668206 87718206 739 N 50000 clone yes
158 chr2 89630436 89830436 755 N 200000 contig no
178 chr2 110109337 110251337 893 N 142000 contig no
304 chr2 243102476 243152476 2025 N 50000 clone yes
585 chr2 0 10000 1 N 10000 telomere no
709 chr2 16279724 16329724 149 N 50000 contig no
746 chr2 21153113 21178113 192 N 25000 contig no
1274 chr2 90321525 90371525 760 N 50000 clone yes
1283 chr2 91545103 91595103 763 N 50000 clone no
1727 chr2 149690582 149790582 1221 N 100000 contig no
2370 chr2 234003741 234053741 1942 N 50000 contig no
2414 chr2 239801978 239831978 1992 N 30000 contig no
2422 chr2 240784132 240809132 2001 N 25000 contig no
2440 chr2 243189373 243199373 2027 N 10000 telomere no
2 chr3 90504854 93504854 784 N 3000000 centromere no
136 chr3 66170270 66270270 565 N 100000 contig no
585 chr3 0 10000 1 N 10000 telomere no
585 chr3 10000 60000 2 N 50000 clone no
2065 chr3 194041961 194047251 1693 N 5290 contig no
2095 chr3 197962430 198012430 1732 N 50000 contig no
2095 chr3 198012430 198022430 1733 N 10000 telomere no
1 chr4 49660117 52660117 447 N 3000000 centromere no
16 chr4 59739333 59789333 510 N 50000 contig no
74 chr4 1423146 1478646 15 N 55500 contig no
81 chr4 9274642 9324642 88 N 50000 clone yes
120 chr4 49338941 49488941 445 N 150000 contig no
255 chr4 191044276 191144276 1657 N 100000 clone no
585 chr4 0 10000 1 N 10000 telomere no
652 chr4 8799203 8818203 83 N 19000 contig no
827 chr4 31820917 31837417 283 N 16500 contig no
835 chr4 32834638 32840638 294 N 6000 contig no
892 chr4 40296396 40297096 365 N 700 contig no
1160 chr4 75427379 75452279 651 N 24900 contig no
2043 chr4 191144276 191154276 1658 N 10000 telomere no
14 chr5 46405641 49405641 452 N 3000000 centromere no
89 chr5 17530657 17580657 171 N 50000 clone yes
205 chr5 138787073 138837073 1350 N 50000 contig no
585 chr5 0 10000 1 N 10000 telomere no
1284 chr5 91636128 91686128 873 N 50000 contig no
1768 chr5 155138727 155188727 1514 N 50000 contig no
1965 chr5 180905260 180915260 1775 N 10000 telomere no
16 chr6 58830166 61830166 628 N 3000000 centromere no
16 chr6 61830166 61880166 629 N 50000 clone no
164 chr6 95680543 95830543 992 N 150000 contig no
223 chr6 157641300 157691300 1654 N 50000 clone yes
233 chr6 167942073 168042073 1761 N 100000 clone yes
585 chr6 0 10000 1 N 10000 telomere no
585 chr6 10000 60000 2 N 50000 contig no
1028 chr6 58087659 58137659 620 N 50000 clone yes
1033 chr6 58780166 58830166 627 N 50000 clone no
1059 chr6 62128589 62178589 633 N 50000 clone yes
1787 chr6 157559467 157609467 1652 N 50000 clone yes
1884 chr6 170279972 170329972 1787 N 50000 clone yes
1890 chr6 171055067 171105067 1797 N 50000 contig no
1890 chr6 171105067 171115067 1798 N 10000 telomere no
1 chr7 58054331 61054331 564 N 3000000 centromere no
73 chr7 232484 282484 5 N 50000 clone yes
131 chr7 61310513 61360513 569 N 50000 heterochromatin no
131 chr7 61460465 61510465 571 N 50000 clone yes
208 chr7 142048195 142098195 1397 N 50000 clone yes
209 chr7 143347897 143397897 1409 N 50000 clone yes
220 chr7 154270634 154370634 1517 N 100000 contig no
585 chr7 0 10000 1 N 10000 telomere no
969 chr7 50370631 50410631 488 N 40000 contig no
1055 chr7 61677020 61727020 573 N 50000 clone yes
1057 chr7 61917157 61967157 575 N 50000 heterochromatin no
1155 chr7 74715724 74765724 693 N 50000 clone yes
1352 chr7 100556043 100606043 952 N 50000 clone yes
1578 chr7 130154523 130254523 1278 N 100000 clone yes
1648 chr7 139379377 139404377 1368 N 25000 contig no
1670 chr7 142276197 142326197 1399 N 50000 clone yes
1799 chr7 159128663 159138663 1563 N 10000 telomere no
14 chr8 43838887 46838887 376 N 3000000 centromere no
155 chr8 86576451 86726451 716 N 150000 contig no
211 chr8 145332588 145432588 1209 N 100000 contig no
585 chr8 0 10000 1 N 10000 telomere no
642 chr8 7474649 7524649 66 N 50000 contig no
677 chr8 12091854 12141854 105 N 50000 contig no
952 chr8 48130499 48135599 389 N 5100 contig no
1674 chr8 142766515 142816515 1177 N 50000 clone yes
1701 chr8 146304022 146354022 1216 N 50000 contig no
1701 chr8 146354022 146364022 1217 N 10000 telomere no
0 chr9 67107834 67207834 430 N 100000 contig no
1 chr9 47367679 50367679 411 N 3000000 centromere no
1 chr9 50367679 65367679 412 N 15000000 heterochromatin no
17 chr9 70218729 70318729 454 N 100000 contig no
24 chr9 133073060 133223060 982 N 150000 contig no
111 chr9 39974796 40024796 346 N 50000 contig no
111 chr9 40233029 40283029 348 N 50000 clone yes
112 chr9 41143214 41193214 357 N 50000 clone yes
114 chr9 43213698 43313698 375 N 100000 contig no
115 chr9 44676646 44726646 386 N 50000 clone yes
115 chr9 44908293 44958293 388 N 50000 clone yes
117 chr9 46461039 46561039 403 N 100000 contig no
135 chr9 65367679 65467679 413 N 100000 contig no
135 chr9 65918360 65968360 418 N 50000 contig no
136 chr9 66404656 66454656 423 N 50000 clone yes
137 chr9 67366296 67516296 432 N 150000 contig no
137 chr9 67987998 68137998 437 N 150000 contig no
138 chr9 68514181 68664181 441 N 150000 contig no
138 chr9 68838946 68988946 443 N 150000 contig no
140 chr9 70506535 70556535 456 N 50000 contig no
140 chr9 70735468 70835468 458 N 100000 contig no
161 chr9 92343416 92443416 641 N 100000 clone yes
161 chr9 92528796 92678796 643 N 150000 clone yes
205 chr9 139166997 139216997 1040 N 50000 contig no
207 chr9 141153431 141203431 1057 N 50000 contig no
585 chr9 0 10000 1 N 10000 telomere no
887 chr9 39663686 39713686 343 N 50000 clone yes
893 chr9 40425834 40475834 350 N 50000 contig no
897 chr9 40940341 40990341 354 N 50000 contig no
900 chr9 41365793 41415793 359 N 50000 contig no
910 chr9 42613955 42663955 370 N 50000 contig no
920 chr9 43946569 43996569 381 N 50000 clone yes
930 chr9 45250203 45350203 391 N 100000 contig no
934 chr9 45815521 45865521 397 N 50000 contig no
937 chr9 46216430 46266430 400 N 50000 clone yes
944 chr9 47060133 47160133 408 N 100000 contig no
946 chr9 47317679 47367679 410 N 50000 clone no
1090 chr9 66192215 66242215 421 N 50000 clone yes
1093 chr9 66614195 66664195 425 N 50000 clone yes
1095 chr9 66863343 66913343 428 N 50000 clone yes
1113 chr9 69278385 69328385 446 N 50000 clone yes
1119 chr9 70010542 70060542 452 N 50000 clone yes
1630 chr9 137041193 137091193 1020 N 50000 contig no
1662 chr9 141203431 141213431 1058 N 10000 telomere no
1 chrX 58632012 61632012 583 N 3000000 centromere no
9 chrX 1047557 1097557 16 N 50000 contig no
9 chrX 2068238 2118238 31 N 50000 contig no
14 chrX 49242997 49292997 484 N 50000 contig no
15 chrX 52395914 52445914 518 N 50000 contig no
73 chrX 94821 144821 4 N 50000 contig no
73 chrX 231384 281384 8 N 50000 contig no
74 chrX 1134113 1184113 18 N 50000 contig no
74 chrX 1264234 1314234 21 N 50000 contig no
83 chrX 10738674 10788674 111 N 50000 clone yes
128 chrX 58582012 58632012 582 N 50000 clone no
146 chrX 76653692 76703692 724 N 50000 contig no
187 chrX 120013235 120063235 1268 N 50000 clone yes
209 chrX 143507324 143557324 1536 N 50000 contig no
218 chrX 152277099 152327099 1624 N 50000 clone yes
585 chrX 0 10000 1 N 10000 telomere no
585 chrX 10000 60000 2 N 50000 contig no
643 chrX 7623882 7673882 82 N 50000 clone yes
868 chrX 37098256 37148256 355 N 50000 contig no
966 chrX 49974173 50024173 494 N 50000 contig no
1055 chrX 61632012 61682012 584 N 50000 clone no
1451 chrX 113517668 113567668 1183 N 50000 contig no
1467 chrX 115682290 115732290 1214 N 50000 contig no
1721 chrX 148906424 148956424 1591 N 50000 clone yes
1722 chrX 149032062 149082062 1594 N 50000 contig no
1769 chrX 155260560 155270560 1668 N 10000 telomere no
585 chrY 0 10000 1 N 10000 telomere no
585 chrY 44821 94821 3 N 50000 contig no
586 chrY 181384 231384 7 N 50000 contig no
592 chrY 997557 1047557 15 N 50000 contig no
593 chrY 1084113 1134113 17 N 50000 contig no
594 chrY 1214234 1264234 20 N 50000 contig no
600 chrY 2018238 2068238 30 N 50000 contig no
653 chrY 8914955 8964955 92 N 50000 contig no
655 chrY 9241322 9291322 97 N 50000 contig no
10 chrY 10104553 13104553 105 N 3000000 centromere no
685 chrY 13143954 13193954 107 N 50000 contig no
86 chrY 13748578 13798578 112 N 50000 contig no
92 chrY 20143885 20193885 169 N 50000 clone yes
94 chrY 22369679 22419679 190 N 50000 clone yes
767 chrY 23901428 23951428 204 N 50000 contig no
1 chrY 28819361 58819361 249 N 30000000 heterochromatin no
1034 chrY 58917656 58967656 251 N 50000 contig no
1037 chrY 59363566 59373566 255 N 10000 telomere no
1 chr10 39254935 42254935 341 N 3000000 centromere no
110 chr10 39154935 39254935 340 N 100000 contig no
113 chr10 42254935 42354935 342 N 100000 contig no
118 chr10 47429169 47529169 387 N 100000 contig no
118 chr10 47792476 47892476 390 N 100000 contig no
118 chr10 48055707 48105707 392 N 50000 contig no
119 chr10 49095536 49195536 403 N 100000 contig no
195 chr10 128616069 128766069 1088 N 150000 contig no
200 chr10 133381404 133431404 1129 N 50000 clone yes
200 chr10 133677527 133727527 1135 N 50000 clone yes
202 chr10 135524747 135534747 1156 N 10000 telomere no
585 chr10 0 10000 1 N 10000 telomere no
585 chr10 10000 60000 2 N 50000 contig no
722 chr10 17974675 18024675 161 N 50000 clone yes
881 chr10 38818835 38868835 337 N 50000 clone yes
909 chr10 42546687 42596687 344 N 50000 clone yes
939 chr10 46426964 46476964 375 N 50000 contig no
975 chr10 51137410 51187410 419 N 50000 clone yes
977 chr10 51398845 51448845 421 N 50000 clone yes
1545 chr10 125869472 125919472 1061 N 50000 clone yes
15 chr11 51644205 54644205 447 N 3000000 centromere no
74 chr11 1162759 1212759 14 N 50000 clone yes
121 chr11 50833853 51040853 440 N 207000 heterochromatin no
122 chr11 51594205 51644205 446 N 50000 clone no
125 chr11 54644205 54694205 448 N 50000 clone no
139 chr11 69724695 69774695 583 N 50000 clone yes
164 chr11 96287584 96437584 808 N 150000 contig no
201 chr11 134996516 135006516 1135 N 10000 telomere no
585 chr11 0 10000 1 N 10000 telomere no
585 chr11 10000 60000 2 N 50000 contig no
972 chr11 50783853 50833853 439 N 50000 clone no
974 chr11 51040853 51090853 441 N 50000 clone no
1112 chr11 69089801 69139801 575 N 50000 clone yes
1254 chr11 87688378 87738378 736 N 50000 clone yes
1614 chr11 134946516 134996516 1134 N 50000 contig no
13 chr12 34856694 37856694 304 N 3000000 centromere no
73 chr12 95739 145739 4 N 50000 clone yes
79 chr12 7189876 7239876 66 N 50000 contig no
189 chr12 122530623 122580623 1075 N 50000 contig no
199 chr12 132706992 132806992 1171 N 100000 contig no
585 chr12 0 10000 1 N 10000 telomere no
585 chr12 10000 60000 2 N 50000 contig no
1419 chr12 109373470 109423470 954 N 50000 contig no
1606 chr12 133841895 133851895 1183 N 10000 telomere no
1 chr13 10000 16000000 2 N 15990000 short_arm no
1 chr13 16000000 19000000 3 N 3000000 centromere no
91 chr13 19000000 19020000 4 N 20000 heterochromatin no
155 chr13 86760324 86910324 617 N 150000 contig no
180 chr13 112353994 112503994 848 N 150000 contig no
182 chr13 114325993 114425993 866 N 100000 contig no
182 chr13 114639948 114739948 870 N 100000 contig no
585 chr13 0 10000 1 N 10000 telomere no
1463 chr13 115109878 115159878 875 N 50000 contig no
1463 chr13 115159878 115169878 876 N 10000 telomere no
1 chr14 10000 16000000 2 N 15990000 short_arm no
1 chr14 16000000 19000000 3 N 3000000 centromere no
175 chr14 107339540 107349540 668 N 10000 telomere no
585 chr14 0 10000 1 N 10000 telomere no
1403 chr14 107289540 107339540 667 N 50000 contig no
1 chr15 10000 17000000 2 N 16990000 short_arm no
11 chr15 17000000 20000000 3 N 3000000 centromere no
18 chr15 82829645 82879645 518 N 50000 contig no
93 chr15 21398819 21885000 16 N 486181 clone yes
585 chr15 0 10000 1 N 10000 telomere no
744 chr15 20894633 20935075 12 N 40442 clone yes
754 chr15 22212114 22262114 19 N 50000 contig no
757 chr15 22596193 22646193 23 N 50000 contig no
764 chr15 23514853 23564853 31 N 50000 contig no
807 chr15 29159443 29209443 83 N 50000 contig no
1233 chr15 84984473 85034473 539 N 50000 contig no
1367 chr15 102521392 102531392 690 N 10000 telomere no
1 chr16 38335801 46335801 355 N 8000000 heterochromatin no
13 chr16 35335801 38335801 354 N 3000000 centromere no
81 chr16 8636921 8686921 128 N 50000 clone yes
105 chr16 34023150 34173150 343 N 150000 contig no
159 chr16 90294753 90344753 731 N 50000 contig no
585 chr16 0 10000 1 N 10000 telomere no
585 chr16 10000 60000 2 N 50000 contig no
854 chr16 35285801 35335801 353 N 50000 clone no
938 chr16 46335801 46385801 356 N 50000 clone no
1259 chr16 88389383 88439383 712 N 50000 contig no
1274 chr16 90344753 90354753 732 N 10000 telomere no
1 chr17 22263006 25263006 192 N 3000000 centromere no
18 chr17 77546461 77596461 644 N 50000 clone yes
73 chr17 296626 396626 4 N 100000 contig no
93 chr17 21566608 21666608 185 N 100000 contig no
849 chr17 34675848 34725848 278 N 50000 contig no
1061 chr17 62410760 62460760 523 N 50000 clone yes
1193 chr17 79709049 79759049 665 N 50000 contig no
1 chr18 15460898 18460898 125 N 3000000 centromere no
90 chr18 18460898 18510898 126 N 50000 clone no
122 chr18 52059136 52209136 398 N 150000 contig no
145 chr18 75721820 75771820 585 N 50000 clone yes
585 chr18 0 10000 1 N 10000 telomere no
702 chr18 15410898 15460898 124 N 50000 clone no
1136 chr18 72283353 72333353 555 N 50000 clone yes
1180 chr18 78017248 78067248 604 N 50000 contig no
1180 chr18 78067248 78077248 605 N 10000 telomere no
1 chr19 24681782 27681782 410 N 3000000 centromere no
96 chr19 24631782 24681782 409 N 50000 heterochromatin no
585 chr19 0 10000 1 N 10000 telomere no
585 chr19 10000 60000 2 N 50000 contig no
641 chr19 7346004 7396004 170 N 50000 contig no
651 chr19 8687198 8737198 190 N 50000 contig no
741 chr19 20523415 20573415 367 N 50000 clone yes
796 chr19 27681782 27731782 411 N 50000 heterochromatin no
1036 chr19 59118983 59128983 870 N 10000 telomere no
12 chr20 26369569 29369569 275 N 3000000 centromere no
98 chr20 26319569 26369569 274 N 50000 clone no
101 chr20 29653908 29803908 279 N 150000 contig no
585 chr20 0 10000 1 N 10000 telomere no
585 chr20 10000 60000 2 N 50000 contig no
809 chr20 29369569 29419569 276 N 50000 clone no
851 chr20 34897085 34947085 336 N 50000 clone yes
1051 chr20 61091437 61141437 624 N 50000 clone yes
1052 chr20 61213369 61263369 628 N 50000 contig no
1065 chr20 62965520 63015520 648 N 50000 contig no
1065 chr20 63015520 63025520 649 N 10000 telomere no
1 chr21 5211193 9411193 3 N 4200000 contig no
9 chr21 10000 5211193 2 N 5201193 short_arm no
10 chr21 11288129 14288129 22 N 3000000 centromere no
14 chr21 42955559 43005559 419 N 50000 contig no
82 chr21 10215976 10365976 12 N 150000 contig no
83 chr21 11238129 11288129 21 N 50000 heterochromatin no
585 chr21 0 10000 1 N 10000 telomere no
658 chr21 9595548 9645548 5 N 50000 contig no
659 chr21 9775437 9825437 7 N 50000 contig no
661 chr21 10034920 10084920 10 N 50000 contig no
666 chr21 10647896 10697896 15 N 50000 contig no
670 chr21 11188129 11238129 20 N 50000 clone no
694 chr21 14288129 14338129 23 N 50000 clone no
925 chr21 44632664 44682664 447 N 50000 clone yes
952 chr21 48119895 48129895 515 N 10000 telomere no
1 chr22 10000 13000000 2 N 12990000 short_arm no
1 chr22 16697850 16847850 27 N 150000 contig no
10 chr22 13000000 16000000 3 N 3000000 centromere no
92 chr22 20509431 20609431 81 N 100000 contig no
121 chr22 51244566 51294566 591 N 50000 contig no
585 chr22 0 10000 1 N 10000 telomere no
707 chr22 16000000 16050000 4 N 50000 contig no
969 chr22 50364777 50414777 563 N 50000 contig no
976 chr22 51294566 51304566 592 N 10000 telomere no
9 chr6_apd_hap1 2009922 2164480 41 N 154558 clone yes
73 chr6_apd_hap1 448574 536172 9 N 87598 clone yes
73 chr6_apd_hap1 588761 692953 11 N 104192 clone yes
74 chr6_apd_hap1 1173934 1198528 23 N 24594 clone yes
74 chr6_apd_hap1 1307951 1317697 26 N 9746 clone yes
74 chr6_apd_hap1 1833811 1937682 39 N 103871 clone yes
75 chr6_apd_hap1 2169002 2254169 43 N 85167 clone yes
75 chr6_apd_hap1 2359974 2761234 48 N 401260 clone yes
75 chr6_apd_hap1 2894657 3037482 54 N 142825 clone yes
76 chr6_apd_hap1 3180323 3355295 59 N 174972 clone yes
76 chr6_apd_hap1 3370179 3415446 62 N 45267 clone yes
76 chr6_apd_hap1 3491066 3594101 64 N 103035 clone yes
76 chr6_apd_hap1 3790366 3970602 72 N 180236 clone yes
77 chr6_apd_hap1 4390029 4597885 79 N 207856 clone yes
586 chr6_apd_hap1 207807 252060 4 N 44253 clone yes
587 chr6_apd_hap1 327074 356458 6 N 29384 clone yes
592 chr6_apd_hap1 944435 963558 16 N 19123 clone yes
592 chr6_apd_hap1 970040 1029417 18 N 59377 clone yes
595 chr6_apd_hap1 1341208 1344139 28 N 2931 clone yes
596 chr6_apd_hap1 1451581 1556172 31 N 104591 clone yes
597 chr6_apd_hap1 1582549 1598989 33 N 16440 clone yes
598 chr6_apd_hap1 1736596 1786349 37 N 49753 clone yes
606 chr6_apd_hap1 2821679 2858431 51 N 36752 clone yes
608 chr6_apd_hap1 3122973 3136480 56 N 13507 clone yes
612 chr6_apd_hap1 3638667 3642320 66 N 3653 clone yes
613 chr6_apd_hap1 3696623 3736194 68 N 39571 clone yes
613 chr6_apd_hap1 3762870 3766192 70 N 3322 clone yes
617 chr6_apd_hap1 4220467 4274176 76 N 53709 clone yes
75 chr6_dbb_hap3 2606257 2723615 42 N 117358 clone yes
76 chr6_dbb_hap3 3407000 3481304 52 N 74304 clone yes
586 chr6_dbb_hap3 138055 245960 4 N 107905 clone yes
589 chr6_dbb_hap3 622457 640380 11 N 17923 clone yes
595 chr6_dbb_hap3 1337861 1344119 21 N 6258 clone yes
599 chr6_dbb_hap3 1836690 1837200 29 N 510 clone yes
601 chr6_dbb_hap3 2117295 2119813 33 N 2518 clone yes
613 chr6_dbb_hap3 3736386 3772614 59 N 36228 clone yes
617 chr6_dbb_hap3 4206542 4226964 66 N 20422 clone yes
618 chr6_dbb_hap3 4354126 4376794 69 N 22668 clone yes
9 chr6_mcf_hap5 2091199 2189158 37 N 97959 clone yes
73 chr6_mcf_hap5 229133 282732 7 N 53599 clone yes
73 chr6_mcf_hap5 383988 404415 10 N 20427 clone yes
73 chr6_mcf_hap5 491590 560421 12 N 68831 clone yes
74 chr6_mcf_hap5 1177759 1292220 23 N 114461 clone yes
74 chr6_mcf_hap5 1562952 1726699 28 N 163747 clone yes
74 chr6_mcf_hap5 1815769 1838106 30 N 22337 clone yes
75 chr6_mcf_hap5 2712451 2811903 49 N 99452 clone yes
77 chr6_mcf_hap5 4422172 4594253 78 N 172081 clone yes
586 chr6_mcf_hap5 135141 138043 3 N 2902 clone yes
586 chr6_mcf_hap5 179429 186757 5 N 7328 clone yes
590 chr6_mcf_hap5 676599 685588 15 N 8989 clone yes
592 chr6_mcf_hap5 994250 1009296 20 N 15046 clone yes
602 chr6_mcf_hap5 2241824 2251998 39 N 10174 clone yes
602 chr6_mcf_hap5 2300850 2305647 41 N 4797 clone yes
607 chr6_mcf_hap5 2947576 2958999 52 N 11423 clone yes
609 chr6_mcf_hap5 3154498 3188719 55 N 34221 clone yes
610 chr6_mcf_hap5 3329672 3355524 58 N 25852 clone yes
612 chr6_mcf_hap5 3602941 3659279 65 N 56338 clone yes
614 chr6_mcf_hap5 3899294 3929849 69 N 30555 clone yes
616 chr6_mcf_hap5 4149579 4149626 73 N 47 clone yes
617 chr6_mcf_hap5 4284353 4302274 76 N 17921 clone yes
73 chr6_qbl_hap6 521900 681210 9 N 159310 clone yes
605 chr6_qbl_hap6 2680914 2732064 37 N 51150 clone yes
608 chr6_qbl_hap6 3023176 3049607 42 N 26431 clone yes
610 chr6_qbl_hap6 3316246 3369039 46 N 52793 clone yes
615 chr6_qbl_hap6 3993031 4020006 57 N 26975 clone yes
9 chr6_mann_hap4 3062107 3151453 47 N 89346 clone yes
76 chr6_mann_hap4 3261361 3374492 52 N 113131 clone yes
77 chr6_mann_hap4 4441658 4480941 73 N 39283 clone yes
586 chr6_mann_hap4 145852 184243 3 N 38391 clone yes
595 chr6_mann_hap4 1388812 1438812 19 N 50000 clone yes
600 chr6_mann_hap4 2047420 2056121 28 N 8701 clone yes
602 chr6_mann_hap4 2252213 2277026 32 N 24813 clone yes
602 chr6_mann_hap4 2312291 2324610 34 N 12319 clone yes
604 chr6_mann_hap4 2517052 2540962 37 N 23910 clone yes
606 chr6_mann_hap4 2772006 2810953 42 N 38947 clone yes
607 chr6_mann_hap4 2921096 2929556 45 N 8460 clone yes
609 chr6_mann_hap4 3174271 3227203 49 N 52932 clone yes
611 chr6_mann_hap4 3412258 3450867 54 N 38609 clone yes
612 chr6_mann_hap4 3553455 3557741 56 N 4286 clone yes
614 chr6_mann_hap4 3895092 3926341 62 N 31249 clone yes
617 chr6_mann_hap4 4236950 4245095 68 N 8145 clone yes
9 chr6_ssto_hap7 3093568 3154699 62 N 61131 clone yes
73 chr6_ssto_hap7 861800 941242 15 N 79442 clone yes
75 chr6_ssto_hap7 2138491 2303018 43 N 164527 clone yes
76 chr6_ssto_hap7 3368931 3445987 68 N 77056 clone yes
77 chr6_ssto_hap7 4580410 4610218 86 N 29808 clone yes
598 chr6_ssto_hap7 1727717 1744408 28 N 16691 clone yes
599 chr6_ssto_hap7 1836632 1838892 34 N 2260 clone yes
600 chr6_ssto_hap7 1983561 1997824 37 N 14263 clone yes
600 chr6_ssto_hap7 2052735 2087415 39 N 34680 clone yes
601 chr6_ssto_hap7 2101474 2113875 41 N 12401 clone yes
603 chr6_ssto_hap7 2411247 2461193 48 N 49946 clone yes
608 chr6_ssto_hap7 3040184 3054966 60 N 14782 clone yes
609 chr6_ssto_hap7 3191196 3214366 64 N 23170 clone yes
618 chr6_ssto_hap7 4370564 4420564 83 N 50000 clone yes
620 chr6_ssto_hap7 4639806 4661556 88 N 21750 clone yes
621 chr6_ssto_hap7 4723509 4774367 90 N 50858 clone yes
621 chr6_ssto_hap7 4783798 4836049 92 N 52251 clone yes
594 chr17_ctg5_hap1 1256794 1306794 12 N 50000 clone yes
597 chr17_ctg5_hap1 1588968 1638968 15 N 50000 clone yes
73 chr4_gl877872_fix 216051 266051 5 N 50000 scaffold yes
74 chr5_gl339449_alt 1138692 1238692 11 N 100000 scaffold yes
586 chr7_jh636058_fix 170100 220100 3 N 50000 scaffold yes
74 chrX_jh806590_fix 1587823 1717823 16 N 130000 scaffold yes
600 chr10_jh591181_fix 2010264 2060264 25 N 50000 scaffold yes
73 chr11_jh806581_fix 499909 549909 5 N 50000 scaffold yes
588 chr17_gl383561_fix 448214 466467 6 N 18253 scaffold yes
588 chr17_gl383561_fix 513301 513321 8 N 20 scaffold yes
589 chr17_gl383561_fix 628875 628895 10 N 20 scaffold yes
589 chr17_gl383561_fix 635816 635918 12 N 102 scaffold yes
589 chr17_gl383561_fix 636913 637464 14 N 551 scaffold yes
586 chr17_jh720447_fix 190775 240775 3 N 50000 scaffold yes
585 chr17_ke332502_fix 100012 100085 3 N 73 scaffold yes
585 chr17_ke332502_fix 101792 102078 5 N 286 scaffold yes
585 chr17_ke332502_fix 104926 105301 7 N 375 scaffold yes
586 chr17_ke332502_fix 160048 160456 9 N 408 scaffold yes
586 chr17_ke332502_fix 181878 182834 11 N 956 scaffold yes
586 chr17_ke332502_fix 196662 197232 13 N 570 scaffold yes
587 chr17_ke332502_fix 267213 267233 15 N 20 scaffold yes
587 chr17_ke332502_fix 281523 281724 17 N 201 scaffold yes
587 chr17_ke332502_fix 321182 321624 19 N 442 scaffold yes
587 chr17_ke332502_fix 338198 338308 21 N 110 scaffold yes
585 chr18_gl383571_alt 44225 94225 3 N 50000 scaffold yes
73 chr19_gl949746_alt 700652 800652 7 N 100000 scaffold yes
587 chr19_gl949746_alt 309793 314793 3 N 5000 scaffold yes
586 chr19_gl949747_alt 195631 256631 2 N 61000 scaffold yes
588 chr19_gl949747_alt 394094 399094 4 N 5000 scaffold yes
73 chr19_gl949748_alt 195631 720631 2 N 525000 scaffold yes
73 chr19_gl949748_alt 761613 811613 4 N 50000 scaffold yes
591 chr19_gl949748_alt 845239 877239 6 N 32000 scaffold yes
73 chr19_gl949749_alt 195631 807631 2 N 612000 scaffold yes
591 chr19_gl949749_alt 860776 904776 6 N 44000 scaffold yes
73 chr19_gl949750_alt 195631 819631 2 N 624000 scaffold yes
591 chr19_gl949750_alt 855325 879325 4 N 24000 scaffold yes
73 chr19_gl949751_alt 195631 705631 2 N 510000 scaffold yes
591 chr19_gl949751_alt 789618 815618 6 N 26000 scaffold yes
586 chr19_gl949752_alt 253362 258362 3 N 5000 scaffold yes
73 chr19_gl949753_alt 509414 609414 7 N 100000 scaffold yes
586 chr19_gl949753_alt 195631 213631 2 N 18000 scaffold yes
587 chr19_gl949753_alt 361077 363077 4 N 2000 scaffold yes