How to run baseline model?

[JhuoW]

Hi,
I want to run baseline models with

cd  experiments/h2gcn  
python run_graphsage_experiments.py -c configs/real-geomgcn/graphsage.json run --debug

I got the following error:

[07-03 04:53:12 run_model@4c95f334af46cefe80977d9c96123445     INFO] Traceback (most recent call last):
[07-03 04:53:12 run_model@4c95f334af46cefe80977d9c96123445     INFO] File "model.py", line 10, in <module>
[07-03 04:53:12 run_model@4c95f334af46cefe80977d9c96123445     INFO] import dataset
[07-03 04:53:12 run_model@4c95f334af46cefe80977d9c96123445     INFO] ModuleNotFoundError: No module named 'dataset'
[07-03 04:53:13 run_model@4c95f334af46cefe80977d9c96123445    ERROR] Check log at /H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb/experiments/graphsage_experiments/terminal_output.log

And the terminal_output.log contains:

[07-03 04:43:07     INFO] ===============
>>>>Executing command ['/home/anaconda3/bin/python', '-u', 'model.py', '--dataset_path', '/H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb', '--dataset', 'ind.cora-unmodified-0.48p__0.2p', '--run_id=H2GCN --network_setup M64-T1-G-V-C1-MO --adj_nhood 1 2 --l2_regularize_weight 1e-5@ce7091201460a2a7d3384b919b781b63_9caf91da0e68a2cb7a0d7b4c648929c4_20c7d1b09c28a20e6fa374cc6c8544e8_8b2d686c68a5e9f7ff474419f73f3a6d_0c634e96f738e8800231132e2848e303_248ec654a2e8d5f30df7ac8ef12d3cf5_a4007892967f684b0be93efd41b1d2f3_83150345b828a1192e923bc2e926b66b', '--use_signac', '--signac_root', '/H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb/experiments/graphsage_experiments', '--val_size', '1019', 'H2GCN', '--network_setup', 'M64-T1-G-V-C1-MO', '--adj_nhood', '1', '2', '--l2_regularize_weight', '1e-5']
===============
[07-03 04:43:08     INFO] Traceback (most recent call last):
[07-03 04:43:08     INFO] File "model.py", line 10, in <module>
[07-03 04:43:08     INFO] import dataset
[07-03 04:43:08     INFO] ModuleNotFoundError: No module named 'dataset'
[07-03 04:43:08    ERROR] Check log at /H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb/experiments/graphsage_experiments/terminal_output.log
[07-03 04:45:57     INFO] ===============
>>>>Executing command ['/home/anaconda3/bin/python', '-u', 'model.py', '--dataset_path', ’/H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb', '--dataset', 'ind.cora-unmodified-0.48p__0.2p', '--run_id=H2GCN --network_setup M64-T1-G-V-C1-MO --adj_nhood 1 2 --l2_regularize_weight 1e-5@ce7091201460a2a7d3384b919b781b63_9caf91da0e68a2cb7a0d7b4c648929c4_20c7d1b09c28a20e6fa374cc6c8544e8_8b2d686c68a5e9f7ff474419f73f3a6d_0c634e96f738e8800231132e2848e303_248ec654a2e8d5f30df7ac8ef12d3cf5_a4007892967f684b0be93efd41b1d2f3_83150345b828a1192e923bc2e926b66b', '--use_signac', '--signac_root', '/H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb/experiments/graphsage_experiments', '--val_size', '1019', 'H2GCN', '--network_setup', 'M64-T1-G-V-C1-MO', '--adj_nhood', '1', '2', '--l2_regularize_weight', '1e-5']
===============
[07-03 04:45:58     INFO] Traceback (most recent call last):
[07-03 04:45:58     INFO] File "model.py", line 10, in <module>
[07-03 04:45:58     INFO] import dataset
[07-03 04:45:58     INFO] ModuleNotFoundError: No module named 'dataset'
[07-03 04:45:58    ERROR] Check log at /H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb/experiments/graphsage_experiments/terminal_output.log
[07-03 04:53:11     INFO] ===============
>>>>Executing command ['/anaconda3/bin/python', '-u', 'model.py', '--dataset_path', '/H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb', '--dataset', 'ind.cora-unmodified-0.48p__0.2p', '--run_id=--hid_units 64 --epochs 500@ce7091201460a2a7d3384b919b781b63_9caf91da0e68a2cb7a0d7b4c648929c4_20c7d1b09c28a20e6fa374cc6c8544e8_8b2d686c68a5e9f7ff474419f73f3a6d_0c634e96f738e8800231132e2848e303_248ec654a2e8d5f30df7ac8ef12d3cf5_a4007892967f684b0be93efd41b1d2f3_83150345b828a1192e923bc2e926b66b', '--use_signac', '--signac_root', '/H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb/experiments/graphsage_experiments', '--val_size', '1019', '--hid_units', '64', '--epochs', '500']
===============
[07-03 04:53:12     INFO] Traceback (most recent call last):
[07-03 04:53:12     INFO] File "model.py", line 10, in <module>
[07-03 04:53:12     INFO] import dataset
[07-03 04:53:12     INFO] ModuleNotFoundError: No module named 'dataset'
[07-03 04:53:13    ERROR] Check log at /H2GCN/experiments/h2gcn/workspace/4c95f334af46cefe80977d9c96123445/features/e9cf54653de9231697763f2d1216eb5c/splits/eb8f45d8594346aa36c4773fc43f13fb/experiments/graphsage_experiments/terminal_output.log

I don't know whether it is the right way to directly run the baseline models, could you help me solve this problem? Thx

[jiong-zhu]

Thank you for your interest in our work!

From the logs you post it seems that the file baselines/graphsage-simple/graphsage/dataset.py is missing or corrupted: it is supposed to be a symbolic link to the file experiments/h2gcn/utils/dataset.py. You could try to recreate the symbolic link, or copy the file experiments/h2gcn/utils/dataset.py to the path baselines/graphsage-simple/graphsage/dataset.py; either approach should be able to resolve this issue.

[JhuoW]

Thank you for your answer.