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New failing tests #3566

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seisman opened this issue Jun 30, 2020 · 5 comments
Closed

New failing tests #3566

seisman opened this issue Jun 30, 2020 · 5 comments

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@seisman
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seisman commented Jun 30, 2020

Three tests crash in macOS CI, but they all work for me locally.

1/3 Test #405: grdimage/marbles.sh ..............***Failed    0.58 sec
ERROR: Caught signal number 11 (Segmentation fault) at
0   libproj.19.dylib                    0x000000010f6c3e0a _ZL13pj_obj_createP9projCtx_tRKN7dropbox6oxygen2nnINSt3__110shared_ptrIN5osgeo4proj6common16IdentifiedObjectEEEEE + 588
1   ???                                 0x0000000000000020 0x0 + 32
Stack backtrace:
0   libgmt.6.dylib                      0x000000010bdab40c sig_handler + 908
1   libsystem_platform.dylib            0x00007fff6aa085fd _sigtramp + 29
2   ???                                 0x0000000000000000 0x0 + 0
3   libproj.19.dylib                    0x000000010f6d14fd proj_create_ellipsoidal_2D_cs + 161
4   libgdal.27.dylib                    0x000000010cfc95d4 _ZN19OGRSpatialReference9SetGeogCSEPKcS1_S1_ddS1_dS1_d + 322
5   libgdal.27.dylib                    0x000000010d1b4945 GTIFGetOGISDefnAsOSR + 3507
6   libgdal.27.dylib                    0x000000010d16e61c _ZN12GTiffDataset17LookForProjectionEv + 206
7   libgdal.27.dylib                    0x000000010d1872d7 _ZNK12GTiffDataset13GetSpatialRefEv + 35
8   libgdal.27.dylib                    0x000000010d456e3e GDALGetProjectionRef + 20
9   libgmt.6.dylib                      0x000000010bed4b57 populate_metadata + 775
10  libgmt.6.dylib                      0x000000010becdbe1 gmt_gdalread + 6785
11  libgmt.6.dylib                      0x000000010bee4a01 gmt_gdal_read_grd_info + 513
12  libgmt.6.dylib                      0x000000010bf2e0e9 gmtlib_read_grd_info + 329
13  libgmt.6.dylib                      0x000000010c6c0927 GMT_grdimage + 7047
14  libgmt.6.dylib                      0x000000010be2593e GMT_Call_Module + 2686
15  gmt                                 0x000000010bd9b9bf main + 2879
16  libdyld.dylib                       0x00007fff6a80bcc9 start + 1
17  ???                                 0x0000000000000007 0x0 + 7
ERROR: gmtest:54
memtrack errors: 0
exit status: 1

2/3 Test #400: grdimage/grdimage_img_tif.sh .....***Failed    1.45 sec
ERROR: Caught signal number 11 (Segmentation fault) at
0   libproj.19.dylib                    0x000000010f158e0a _ZL13pj_obj_createP9projCtx_tRKN7dropbox6oxygen2nnINSt3__110shared_ptrIN5osgeo4proj6common16IdentifiedObjectEEEEE + 588
1   ???                                 0x0000000000000020 0x0 + 32
Stack backtrace:
0   libgmt.6.dylib                      0x000000010b84f40c sig_handler + 908
1   libsystem_platform.dylib            0x00007fff6aa085fd _sigtramp + 29
2   ???                                 0x0000000000000002 0x0 + 2
3   libproj.19.dylib                    0x000000010f1661a9 proj_create_cartesian_2D_cs + 109
4   libgdal.27.dylib                    0x000000010ca692cd _ZN19OGRSpatialReference9SetProjCSEPKc + 131
5   libgdal.27.dylib                    0x000000010cc5512e GTIFGetOGISDefnAsOSR + 1436
6   libgdal.27.dylib                    0x000000010cc0f61c _ZN12GTiffDataset17LookForProjectionEv + 206
7   libgdal.27.dylib                    0x000000010cc282d7 _ZNK12GTiffDataset13GetSpatialRefEv + 35
8   libgdal.27.dylib                    0x000000010cef7e3e GDALGetProjectionRef + 20
9   libgmt.6.dylib                      0x000000010b978b57 populate_metadata + 775
10  libgmt.6.dylib                      0x000000010b971be1 gmt_gdalread + 6785
11  libgmt.6.dylib                      0x000000010b988a01 gmt_gdal_read_grd_info + 513
12  libgmt.6.dylib                      0x000000010b9d20e9 gmtlib_read_grd_info + 329
13  libgmt.6.dylib                      0x000000010c164927 GMT_grdimage + 7047
14  libgmt.6.dylib                      0x000000010b8c993e GMT_Call_Module + 2686
15  gmt                                 0x000000010b83e9bf main + 2879
16  libdyld.dylib                       0x00007fff6a80bcc9 start + 1
ERROR: gmtest:54
memtrack errors: 0
exit status: 1

3/3 Test #201: ex52/ex52.sh .....................***Failed    1.56 sec
Set GMT_SESSION_NAME = 51804
ERROR: Caught signal number 11 (Segmentation fault) at
0   libproj.19.dylib                    0x000000010eb97e0a _ZL13pj_obj_createP9projCtx_tRKN7dropbox6oxygen2nnINSt3__110shared_ptrIN5osgeo4proj6common16IdentifiedObjectEEEEE + 588
1   ???                                 0x0000000000000020 0x0 + 32
Stack backtrace:
0   libgmt.6.dylib                      0x000000010b1a940c sig_handler + 908
1   libsystem_platform.dylib            0x00007fff6aa085fd _sigtramp + 29
2   ???                                 0x0000000000000001 0x0 + 1
3   libproj.19.dylib                    0x000000010eba54fd proj_create_ellipsoidal_2D_cs + 161
4   libgdal.27.dylib                    0x000000010c3c95d4 _ZN19OGRSpatialReference9SetGeogCSEPKcS1_S1_ddS1_dS1_d + 322
5   libgdal.27.dylib                    0x000000010c5b4945 GTIFGetOGISDefnAsOSR + 3507
6   libgdal.27.dylib                    0x000000010c56e61c _ZN12GTiffDataset17LookForProjectionEv + 206
7   libgdal.27.dylib                    0x000000010c5872d7 _ZNK12GTiffDataset13GetSpatialRefEv + 35
8   libgdal.27.dylib                    0x000000010c856e3e GDALGetProjectionRef + 20
9   libgmt.6.dylib                      0x000000010b2d2b57 populate_metadata + 775
10  libgmt.6.dylib                      0x000000010b2d21a1 gmt_gdalread + 32833
11  libgmt.6.dylib                      0x000000010b34a66d gmtlib_read_image + 893
12  libgmt.6.dylib                      0x000000010b25da09 gmtapi_import_image + 4297
13  libgmt.6.dylib                      0x000000010b2505fd gmtapi_import_data + 1181
14  libgmt.6.dylib                      0x000000010b2076b8 gmtapi_get_data + 1032
15  libgmt.6.dylib                      0x000000010b1ee135 GMT_Read_Data + 10293
16  libgmt.6.dylib                      0x000000010bb9f360 GMT_grdmix + 9808
17  libgmt.6.dylib                      0x000000010b22393e GMT_Call_Module + 2686
18  gmt                                 0x000000010b1929bf main + 2879
19  libdyld.dylib                       0x00007fff6a80bcc9 start + 1
ERROR: gmtest:52
memtrack errors: 0
exit status: 1
@seisman
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seisman commented Jun 30, 2020

One failure in Linux CI, but most likely because it fails to download the cache data:

Set GMT_SESSION_NAME = 54864
gmtwhich [NOTICE]:   -> Download cache file: @A2016152023000.L2_LAC_SST.nc
gmtwhich [ERROR]: Libcurl Error: Couldn't connect to server
gmtwhich [WARNING]: You can turn remote file download off by setting GMT_AUTO_DOWNLOAD off.
gmtwhich [ERROR]: File A2016152023000.L2_LAC_SST.nc not found!
grd2xyz [ERROR]: GMT_Read_Data: Wildcards only allowed for DATASET. Use GMT_Read_Group to read groups of other data types
grd2xyz [ERROR]: GMT_Read_Data: Wildcards only allowed for DATASET. Use GMT_Read_Group to read groups of other data types
grd2xyz [ERROR]: GMT_Read_Data: Wildcards only allowed for DATASET. Use GMT_Read_Group to read groups of other data types
grd2xyz [ERROR]: GMT_Read_Data: Wildcards only allowed for DATASET. Use GMT_Read_Group to read groups of other data types
gmtconvert [WARNING]: File lon.b is empty!
gmtconvert [WARNING]: File lat.b is empty!
gmtconvert [WARNING]: File sst.b is empty!
gmtconvert [WARNING]: File qual_sst.b is empty!
gmtconvert [WARNING]: No data records provided
grdmask [WARNING]: File input.b is empty!
/usr/bin/gm compare: image difference exceeds limit (0.210271 > 0.003).
gmtmex/WL_example_3.ps: RMS Error = 0.2103 [FAIL]
memtrack errors: 0
exit status: 1

@PaulWessel
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Interesting the first three all die in GDAL. @joa-quim any ideas? Again, they run locally, except for grdgdal NN fails if run in parallel in ctest.

The SST.nc file: Seems like a glitch in the download

@PaulWessel PaulWessel mentioned this issue Jun 30, 2020
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@PaulWessel
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Two read the day/night images but grdimage_img_tif.sh does not and it also gives that same crash.

@joa-quim
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joa-quim commented Jul 1, 2020

There is a common geotiff denominator.

@seisman
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seisman commented Jul 12, 2020

The tests are caused by buggy GDAL 3.1.1. Now they all pass with GDAL 3.1.2

@seisman seisman closed this as completed Jul 12, 2020
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@joa-quim @seisman @PaulWessel