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Signification modification to unittests for the water-atcor-develop branch #115

Merged
merged 78 commits into from
Nov 13, 2020
Merged

Signification modification to unittests for the water-atcor-develop branch #115

merged 78 commits into from
Nov 13, 2020

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Oceancolour-RG
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In this commit the following changes where made:

  1. The removal of the original test wagl-input dataset for the unittest;
  2. The addition of a new test wagl-input dataset consistent with wagl-water-atcor products;
  3. code cleanup and modification of down-sampling code to accommodate the mndwi.h5 file;
  4. modification of the appropriate unittests to accommodate the wagl-water-atcor products;
  5. black formatting

Rodrigo Garcia and others added 30 commits October 26, 2020 15:29
changed to include resampling of imagery and simple naming convention…
c1c381e 
… (grid name) in as_geo_docs()
modified normalise_band_name() to account for Sentinel-2's 8A band
a9a88fa
extensive modifications to perform MNDWI masking and work-around for …
776cc38 
…Sentinel-2's absent level-1 metadata yaml file
mndwi h5 file added for the integration tests
1f0a036
changes to water-atcor packaging implemented to eodatasets3/scripts/p…
3b0f78d 
…ackagewagl.py
changes to water-atcor packaging applied to tests/integration/test_pa…
82de7b7 
…ckagewagl.py
black formatting to eodatasets3/images.py
403a9cb
black formatting to eodatasets3/scripts/packagewagl.py
d580d72
black formatting to eodatasets3/scripts/tostac.py
a58fb4c
black formatting to eodatasets3/wagl.py
4fda18f
black formatting to tests/integration/test_packagewagl.py
19893f5
reformated eodatasets3/images.py with latest version of black
a876952
reformated eodatasets3/scripts/tostac.py with latest version of black
db1da79
reformatted eodatasets3/wagl.py with latest version of black
628244f
removed LC08_L1TP_092084_20160628_20170323_01_T1.yaml
76b63ae
removed LC80920842016180LGN01.fmask.img-luigi-tmp-8404334440.aux.xm
302b4da
removed LC80920842016180LGN01.fmask.yaml
fee8439
removed LC80920842016180LGN01.gqa.yaml
dfb90bd
removed LC80920842016180LGN01.mndwi.h5
2772339
removed LC80920842016180LGN01.tesp.yaml
bdf914a
removed LC80920842016180LGN01.wagl.h5
c589195
added LC08_L1TP_091086_20141106_20170417_01_T1.odc-metadata.yaml
45cfd7c
added LC80920842016180LGN01.fmask.img
fc09322
added LC80920842016180LGN01.fmask.img-luigi-tmp-0242778241.aux.xml
38ddc9f
added LC80920842016180LGN01.fmask.tmp..img.aux.xml
bd24fa2
added LC80910862014310LGN01.fmask.yaml
fcd7db8
added LC80910862014310LGN01.gqa.yaml
28f15b7
added LC80910862014310LGN01.mndwi.h5
0fbc8d8
added LC80910862014310LGN01.tesp.yaml
4041243
added LC80910862014310LGN01.wagl.h5
110e687
omad and others added 26 commits November 12, 2020 17:36
@omad
Allow inheriting geometry from source datasets
d40025b 
Useful when it's potentially very expensive to do all the vector
operations to determine the valid region from the data itself.
@alexgleith
Add in a lookuptable thumbnail function
fa4b6b5
@alexgleith
Black formatting
32f50ac
@alexgleith
Fix bug in image renaming
532a0e6
@alexgleith
Fix another type annotation
d298aee
@alexgleith
Resolve Jeremy's comments
4c7c8e3
@alexgleith
Fix silly bug
b674683
@alexgleith
Black, it's always black
2c7c40f
@omad
Fix the makefile to rebuild before tests
0961bce
@jeremyh
Update tests, data type for singleband writer
34e8a62
@jeremyh
Tighten the public stac conversion methods, expand them
fb6d644
@jeremyh
Add WKT2 fallback for EO3 CRSes
ad9692e
@jeremyh
Only declare stac extensions that we use
f62b0e0
@jeremyh
Move new stac api into a library, restore old api
c0e2d16 
The old dc_to_stac function is used externally so we need to keep
a shim of it for backwards compatibilty.
@jeremyh
Clearer properties, docs, for stac api
93b7034
@jeremyh
More robust Stac schema downloads
27eefed 
- Use one session for all downloads
- Use a timeout
- Keep cached items much longer when they're stable Stac versions.
- Allow skipping of the cache
- Allow no-network-access usage
- Verbose option for users
@jeremyh
Use stac location for measurements in legacy eo3-to-stac
77b0579
@jeremyh
Fix Travis' Python 3.6 dependencies.
5b359d4 
Cattrs removed 3.6 support, yet it's still trying
to install the new version.
@jeremyh
Consistent float handling in doc comparison
ad9d569
@jeremyh
Improve, clarify stac conversion docs
4637d2e
@alexgleith
Move rapidjson from test to install requires
1a62be5
@Oceancolour-RG
Merge branch 'water-atcor-develop' into water-atcor-develop-rg
d8238ea
removed LC80920842016180LGN01.mndwi.h5
5056bb1
resolved flake8 issues tests/integration/test_packagewagl.py
b29ae1e
added hdf5-tools to .travis.yml
34ec7be
changed filesize to pass travis-ci build. This file/test is unused in…
6d241af 
… water-atcor-develop
@sixy6e sixy6e assigned sixy6e and unassigned sixy6e Nov 13, 2020
sixy6e
sixy6e approved these changes Nov 13, 2020
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Quite a lot of changes, but looks good to me.

@sixy6e sixy6e merged commit 9d8f984 into opendatacube:water-atcor-develop Nov 13, 2020
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5 participants
@Oceancolour-RG @sixy6e @jeremyh @omad @alexgleith