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HCDR3s swapped with trastuzumab HCDR1 in Shanehsazzadeh zero-shot dataset #3

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amirshane opened this issue Dec 21, 2023 · 0 comments

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@amirshane
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amirshane commented Dec 21, 2023

Looking at the data file in data/binding/Shanehsazzadeh2023_trastuzumab_zero_kd.csv it appears that the HCDR3 sequences from https://github.com/AbSciBio/unlocking-de-novo-antibody-design/tree/main have been copied over but in place of trastuzumab's HCDR1 instead of its HCDR3.

For example the first heavy entry is EVQLVESGGGLVQPGGSLRLSCAASTRYFFNGWYYFDVIHWVRQAPGKGLEWVARIYPTNGYTRYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCSRWGGDGFYAMDYWGQGTLVTVSS

The designed HCDR3 TRYFFNGWYYFDV has been swapped for trastuzumab's HCDR1 (GFNIKDTY) and trastuzumab's HCDR3 (SRWGGDGFYAMDY) is still present.

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