APINet

Long Noncoding RNAs and Proteins Interactions: From Experimental Results to Computational Models-Based on Network Method

Objective

The materials, interaction score calculation algorithms, advantages and disadvantages of several popu-lar networks-based methods are summarized and discussed to assist researchers in selecting suitable method and acquiring a more dependable result.

data

We will provide data information on all possible interactions between biomolecules that may be used in the research of lncRNAs’ functions in the file APINet (all possible interactions network).

1. LncRNA-Disease : /APINet/LncRNA-Disease.csv
2. LncRNA-LncRNA : /APINet/LncRNA-LncRNA.csv
3. LncRNA-microRNA : /APINet/LncRNA-microRNA.csv
4. LncRNA-Gene : /APINet/LncRNA-Gene.csv (download from Global Prioritizing Disease Candidate lncRNAs via a Multi level Composite Network )
5. LncRNA-GO :/APINet/LncRNA-GO-GeneRIF interactions/GeneRIF interactions
6. microRNA-microRNA : /APINet/microRNA-microRNA.csv
7. microRNA-Disease : /APINet/microRNA-Disease.csv
8. microRNA-Gene: /APINet/miR-Gene-miRTarBase.csv
9. microRNA-Target : /APINet/miR-Target-miRTarBase.csv
10. Gene-Gene : /APINet/Gene-Gene.csv
11. Gene-Metabolite : /APINet/Gene-Metabolite.csv
12. Metabolite-Metabolite : /APINet/Metabolite-Metabolite.csv
13. Gene-GO : /APINet/Gene-GO.csv
14. Gene-Disease : /APINet/Gene-Disease.csv
15. Gene-Drug : /APINet/drugbank_all_full_database
16. Metabolite-Disease : /APINet/Metabolite-Disease.csv
17. Drug-Disease : /APINet/drugbank_all_full_database
18. Drug-Drug : /APINet/drugbank_all_full_database
19. Drug-Side-effects : /APINet/Drug-Side-Effect.tsv
20. Disease-Disease : /APINet/Disease-Disease/Disease-Disease.csv

Supplementary File

Original figures and frameworks