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test_processconfigsresource.py
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test_processconfigsresource.py
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# Longbow is Copyright (C) of James T Gebbie-Rayet and Gareth B Shannon 2015.
#
# This file is part of the Longbow software which was developed as part of the
# HECBioSim project (http://www.hecbiosim.ac.uk/).
#
# HECBioSim facilitates and supports high-end computing within the UK
# biomolecular simulation community on resources such as ARCHER.
#
# Longbow is free software: you can redistribute it and/or modify it under the
# terms of the GNU General Public License as published by the Free Software
# Foundation, either version 2 of the License, or (at your option) any later
# version.
#
# Longbow is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
# A PARTICULAR PURPOSE. See the GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along with
# Longbow. If not, see <http://www.gnu.org/licenses/>.
"""
This testing module contains the tests for the configuration module methods.
"""
import pytest
from longbow.corelibs.configuration import _processconfigsresource
import longbow.corelibs.exceptions as ex
def test_processconfigsresource1():
"""
Simple test with close to defaults.
"""
parameters = {
"debug": False,
"disconnect": False,
"executable": "",
"executableargs": [],
"hosts": "",
"job": "",
"jobname": "",
"log": "",
"recover": "",
"resource": "",
"replicates": "",
"verbose": False
}
jobdata = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "",
"corespernode": "",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"polling-frequency": "",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "",
"memory": "",
"scripts": "",
"staging-frequency": "",
"sge-peflag": "",
"sge-peoverride": "",
"port": "",
"queue": "",
"remoteworkdir": "",
"resource": "",
"replicates": "",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
expected = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "24",
"corespernode": "24",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "24:00",
"memory": "",
"nochecks": False,
"scripts": "",
"staging-frequency": "300",
"sge-peflag": "mpi",
"sge-peoverride": "false",
"polling-frequency": "300",
"port": "22",
"queue": "",
"recoveryfile": "",
"remoteworkdir": "",
"resource": "host1",
"replicates": "1",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
hostsections = ["host1", "host2", "host3"]
jobs = _processconfigsresource(parameters, jobdata, hostsections)
for item in jobs["LongbowJob"]:
assert jobs["LongbowJob"][item] == expected["LongbowJob"][item]
def test_processconfigsresource2():
"""
Test with resource on command-line.
"""
parameters = {
"debug": False,
"disconnect": False,
"executable": "",
"executableargs": [],
"hosts": "",
"job": "",
"jobname": "",
"log": "",
"recover": "",
"resource": "host2",
"replicates": "",
"verbose": False
}
jobdata = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "",
"corespernode": "",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"polling-frequency": "",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "",
"memory": "",
"scripts": "",
"staging-frequency": "",
"sge-peflag": "",
"sge-peoverride": "",
"port": "",
"queue": "",
"remoteworkdir": "",
"resource": "",
"replicates": "",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
expected = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "24",
"corespernode": "24",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"polling-frequency": "300",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "24:00",
"memory": "",
"nochecks": False,
"scripts": "",
"staging-frequency": "300",
"sge-peflag": "mpi",
"sge-peoverride": "false",
"port": "22",
"queue": "",
"recoveryfile": "",
"remoteworkdir": "",
"resource": "host2",
"replicates": "1",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
hostsections = ["host1", "host2", "host3"]
jobs = _processconfigsresource(parameters, jobdata, hostsections)
for item in jobs["LongbowJob"]:
assert jobs["LongbowJob"][item] == expected["LongbowJob"][item]
def test_processconfigsresource3():
"""
Test for defaulting when resource parameter is missing from jobdata. This
could be for example when using jobfiles and no resource is specified
anywhere.
"""
parameters = {
"debug": False,
"disconnect": False,
"executable": "",
"executableargs": [],
"hosts": "",
"job": "",
"jobname": "",
"log": "",
"recover": "",
"resource": "",
"replicates": "",
"verbose": False
}
jobdata = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "",
"corespernode": "",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"polling-frequency": "",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "",
"memory": "",
"scripts": "",
"staging-frequency": "",
"sge-peflag": "",
"sge-peoverride": "",
"port": "",
"queue": "",
"remoteworkdir": "",
"replicates": "",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
expected = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "24",
"corespernode": "24",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"polling-frequency": "300",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "24:00",
"memory": "",
"nochecks": False,
"scripts": "",
"staging-frequency": "300",
"sge-peflag": "mpi",
"sge-peoverride": "false",
"port": "22",
"queue": "",
"recoveryfile": "",
"remoteworkdir": "",
"resource": "host1",
"replicates": "1",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
hostsections = ["host1", "host2", "host3"]
jobs = _processconfigsresource(parameters, jobdata, hostsections)
for item in jobs["LongbowJob"]:
assert jobs["LongbowJob"][item] == expected["LongbowJob"][item]
def test_processconfigsresource4():
"""
Test for host specified in job file.
"""
parameters = {
"debug": False,
"disconnect": False,
"executable": "",
"executableargs": [],
"hosts": "",
"job": "",
"jobname": "",
"log": "",
"recover": "",
"resource": "",
"replicates": "",
"verbose": False
}
jobdata = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "",
"corespernode": "",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"polling-frequency": "",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "",
"memory": "",
"scripts": "",
"staging-frequency": "",
"sge-peflag": "",
"sge-peoverride": "",
"port": "",
"queue": "",
"remoteworkdir": "",
"resource": "host3",
"replicates": "",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
expected = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "24",
"corespernode": "24",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"polling-frequency": "300",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "24:00",
"memory": "",
"nochecks": False,
"scripts": "",
"staging-frequency": "300",
"sge-peflag": "mpi",
"sge-peoverride": "false",
"port": "22",
"queue": "",
"recoveryfile": "",
"remoteworkdir": "",
"resource": "host3",
"replicates": "1",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
hostsections = ["host1", "host2", "host3"]
jobs = _processconfigsresource(parameters, jobdata, hostsections)
for item in jobs["LongbowJob"]:
assert jobs["LongbowJob"][item] == expected["LongbowJob"][item]
def test_processconfigsresource5():
"""
Test for missing resource parameter exception.
"""
parameters = {
"debug": False,
"disconnect": False,
"executable": "",
"executableargs": [],
"hosts": "",
"job": "",
"jobname": "",
"log": "",
"recover": "",
"resource": "",
"replicates": "",
"verbose": False
}
jobdata = {
"LongbowJob": {
"account": "",
"accountflag": "",
"cluster": "",
"cores": "",
"corespernode": "",
"download-exclude": "",
"download-include": "",
"email-address": "",
"email-flags": "",
"executable": "",
"executableargs": "",
"polling-frequency": "",
"handler": "",
"host": "",
"localworkdir": "",
"modules": "",
"maxtime": "",
"memory": "",
"scripts": "",
"staging-frequency": "",
"sge-peflag": "",
"sge-peoverride": "",
"port": "",
"queue": "",
"remoteworkdir": "",
"resource": "host10",
"replicates": "",
"scheduler": "",
"user": "",
"upload-exclude": "",
"upload-include": ""
}
}
hostsections = ["host1", "host2", "host3"]
with pytest.raises(ex.ConfigurationError):
_processconfigsresource(parameters, jobdata, hostsections)