Empty VCF produced by ClairS

[rowanhowellGE]

Hi,

I ran a set of 21 tumour-normal pairs. All jobs completed successfully but 5 runs returned empty VCFs. Looking into the log file I found the following:

I am running ClairS v0.0.1 from dockerhub, accessed on January 23rd.

Thanks,
Rowan

[zhengzhenxian]

Hi, Rowan,

Thanks so much for reporting the issue. We have fixed the bug and please try to re-pull the docker image(You might need to remove your local image first using dcoker rmi hkubal/clairs:latest ). If the issue persists, please let us know, thanks!

Zhenxian

[rowanhowellGE]

Thanks, the latest version produced proper VCF files with variants in them.