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extend sample files and datasets #11

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GoogleCodeExporter opened this issue Mar 17, 2015 · 5 comments
Closed

extend sample files and datasets #11

GoogleCodeExporter opened this issue Mar 17, 2015 · 5 comments
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@rsalek @mwalzer @cbielow @dtabb73
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Release - v1.0

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@GoogleCodeExporter
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A extended sample file(s) comprising all features of qcML
is needed for implementation aid and testing.

Original issue reported on code.google.com by mathias....@gmail.com on 6 Sep 2013 at 8:08
@mwalzer mwalzer added this to To do in Release - v1.0 Oct 1, 2018
@julianu
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julianu commented Mar 19, 2019 •
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#4 Provide a reference dataset(s) to show QCML in action.

Sample dataset proposed by @dtabb73 PXD006843 (120 RAW files)

@julianu julianu mentioned this issue Mar 19, 2019
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@julianu julianu changed the title extend sample file extend sample files and datasets Mar 19, 2019
@bittremieux
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bittremieux commented Nov 19, 2020 •
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Example files to produce:

  • single input file (QC-Calculator @mwalzer)
  • multiple input files (PTXQC @cbielow: derived from MaxQuant's proteins.txt file).
  • metabolomics (@rsalek)

Possible extra files?

@dtabb73
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dtabb73 commented Nov 24, 2020

I have requested that Marina Kriek produce an mzQC from her updated build of QuaMeter for the 120-experiment Heunis outlier set.

@mwalzer mwalzer mentioned this issue Dec 13, 2020
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@bittremieux
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mzQC version of the 120-experiment outlier set here.

Still missing: units of the metrics.

@bittremieux
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We have the essential example files now, so closing. Of course, additional relevant examples can always be added.

Release - v1.0 automation moved this from Pending to Done Jul 16, 2021
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@mwalzer mwalzer

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@dtabb73 dtabb73

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@rsalek @julianu @mwalzer @cbielow @GoogleCodeExporter @bittremieux @dtabb73