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stage.sh
executable file
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stage.sh
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#!/usr/bin/env bash
# stage.sh -- a script that stages code and data for distribution
set -eu
###############################################################################
STAGE_DIR=${1:-dist/stage}
stage() {
local src=$1 dst=$2
[[ -e "$src" ]] || {
echo >&2 "$src: No such file to stage"
false
}
dst="$STAGE_DIR/$dst"
dstdir=$(dirname "$dst.")
[[ -d "$dstdir" ]] || mkdir -p "$dstdir"
if [[ -d "$src" ]]; then
# use rsync(1) for staging directories
set -x; rsync -aH --delete "$src" "$dst"
else
# use install(1) for staging files when changed
dstfile=$dst
case $dst in */) dstfile=$dst${src##*/}; esac
if [[ "$src" -nt "$dstfile" ]]; then
if [[ -x "$src" ]]; then
set -x; install -m a=rx "$src" "$dst"
else
# preserve flags of non-executable data since install(1) always marks as executable
set -x; install -m a=r "$src" "$dst"
fi
fi
fi
{ set +x; } &>/dev/null
}
symlink() {
local src=$1 dst=$2
dst="$STAGE_DIR/$dst"
dstdir=$(dirname "$dst.")
[[ -d "$dstdir" ]] || mkdir -p "$dstdir"
case $dst in */) dst=$dst${src##*/}; esac
if ! [[ -L "$dst" && $(readlink "$dst") = $src ]]; then
set -x; ln -sfn "$src" "$dst"
fi
{ set +x; } &>/dev/null
}
###############################################################################
# DeepDive shell
stage shell/deepdive bin/
stage shell/deepdive-version util/
stage shell/deepdive-help util/
stage shell/deepdive-env util/
stage shell/deepdive-whereis util/
stage shell/find-deepdive-app util/
stage shell/parse-url.sh util/
stage shell/error util/
stage shell/error-from-file util/
stage shell/warning util/
stage shell/usage util/
stage shell/escape4sh util/
stage compiler/jq2sh util/
stage shell/jq util/
stage shell/make util/
stage shell/logging-with-ts util/
stage shell/deepdive_bash_completion.sh etc/
# DeepDive compiler
stage compiler/deepdive-compile util/
stage compiler/deepdive-check util/
stage compiler/app-has-been-compiled util/
stage compiler/app-has-nothing-to-compile util/
stage compiler/deepdive-default.conf etc/
stage compiler/compile-config util/
stage compiler/compile-check util/
stage compiler/compile-code util/
stage compiler/compile-codegen util/
stage compiler/ddlog-wrapper.sh bin/ddlog
stage .build/submodule/compiler/ddlog/target/scala-2.11/ddlog-assembly-0.1-SNAPSHOT.jar lib/ddlog.jar
stage compiler/hocon2json util/
# DeepDive execution planner and runner
stage runner/deepdive-run util/
stage runner/deepdive-plan util/
stage runner/deepdive-do util/
stage runner/deepdive-redo util/
stage runner/deepdive-mark util/
stage runner/deepdive-done util/
stage runner/format_timestamp util/
stage runner/reset_timestamp util/
stage runner/restore_timestamp util/
stage runner/mark_done util/
stage runner/deepdive-do-getopts.sh util/
stage runner/resolve-args-to-do.sh util/
stage runner/show_progress util/
stage runner/ps_descendants util/
stage runner/deepdive-compute util/
stage runner/load-compute-driver.sh util/
stage runner/compute-driver/local util/compute-driver/
stage runner/compute-driver/torque util/compute-driver/
stage runner/computers-default.conf util/
stage .build/submodule/runner/mkmimo/mkmimo util/
# DeepDive database operations and drivers
stage database/deepdive-query util/
stage database/deepdive-db util/
stage database/deepdive-initdb util/
stage database/deepdive-sql util/
stage database/deepdive-create util/
stage database/deepdive-relation util/
stage database/deepdive-load util/
stage database/deepdive-reload util/
stage database/deepdive-unload util/
stage database/load-db-driver.sh util/
stage database/db-driver/postgresql util/db-driver/
stage database/db-driver/greenplum util/db-driver/
stage database/db-driver/postgresql-xl util/db-driver/
stage database/db-driver/mysql util/db-driver/
stage database/partition_id_range util/
stage database/tsj2fmt util/
stage database/pgtsv_to_json util/
stage database/tsv2tsj util/
stage database/tsv2tsj.pl util/
stage runner/mkmimo/test/util/mkprocs util/
stage database/tsv2json util/
stage util/partition_integers util/
# DDlib
stage ddlib/ddlib lib/python/
stage ddlib/deepdive.py lib/python/
# DeepDive inference engine and supporting utilities
# copying shared libraries required by the dimmwitted sampler and generating a wrapper
PATH="$PWD"/extern/buildkit:"$PATH"
for cmd in dw; do
stage .build/submodule/inference/dimmwitted/$cmd util/sampler-$cmd.bin
install-shared-libraries-required-by "$STAGE_DIR"/lib/dw \
.build/submodule/inference/dimmwitted/$cmd
generate-wrapper-for-libdirs "$STAGE_DIR"/util/sampler-$cmd \
"$STAGE_DIR"/util/sampler-$cmd.bin \
"$STAGE_DIR"/lib/dw
done
stage inference/deepdive-model util/
# Stanford CoreNLP utilities
stage util/nlp/deepdive-corenlp util/
for nlp_util in util/nlp/*
do stage "$nlp_util" util/nlp/
done
# DeepDive utilities
stage extern/buildkit/fetch-verify util/
stage util/draw_calibration_plot util/
stage util/calibration.py util/
stage util/calibration.plg util/
stage .build/submodule/util/mindbender/@prefix@/ mindbender/
stage util/mindbender-wrapper.sh bin/mindbender
# runtime dependencies after building them from source
! [[ -e extern/.build/bundled ]] ||
stage extern/.build/bundled lib/